CRISPRone

CRISPRone report for SRR9713606

♦ Seq 1: NODE_1_length_506664_cov_16.603446

⇒Summary: seq-len = 506664 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4_length_310360_cov_13.930820

⇒Summary: seq-len = 310360 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106390-108706 bp Zoom in on locus 1 x9 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 107145-107408 bp Gene: cd09722:cas1 Type: universal Location: 107411-107650 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107643-108023 bp Gene: cd09652:cas6 Type: other Location: 108035-108706 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106390-106932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_14_length_96042_cov_22.378822

⇒Summary: seq-len = 96042 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86418-94877 bp Zoom in on locus 1 x23 Gene: cd09643:cas9 Type: Subtype-II-C Location: 86418-90728 bp Gene: unk Type: unknown Location: 90744-91268 bp Gene: unk Type: unknown Location: 91335-91643 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 91763-92695 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 92699-93031 bp CRISPR array Location: 93140-94877 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 93140-94877 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 93140-94877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_35_length_45792_cov_13.542340

⇒Summary: seq-len = 45792 bp; # of CRISPR array = 1; # of cas gene = 8  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1333-14152 bp Zoom in on locus 1 x19 Gene: cash17:cash17 Type: Type- Location: 1333-2760 bp Gene: unk Type: unknown Location: 2757-3236 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 3250-4659 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 4664-6466 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 6459-7598 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 7618-8457 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 8470-8880 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 8877-9827 bp Gene: cd09634:cas1 Type: universal Location: 9847-12117 bp CRISPR array Location: 12848-14152 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 12848-14152 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12848-14152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)