CRISPRone

CRISPRone report for SRR9713608

♦ Seq 1: NODE_11_length_153594_cov_19.997662

⇒Summary: seq-len = 153594 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1176-9747 bp Zoom in on locus 1 x23 CRISPR array Location: 1176-2912 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1176-2912 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3021-3353 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3357-4289 bp Gene: unk Type: unknown Location: 4409-4717 bp Gene: unk Type: unknown Location: 4784-5308 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5324-9634 bp antiRepeat Location: 9702-9747 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1176-2912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_499085_cov_15.692650

⇒Summary: seq-len = 499085 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_3_length_451669_cov_13.447362

⇒Summary: seq-len = 451669 bp; # of CRISPR array = 2; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201655-203972 bp 2 Locus 2: 341967-356897 bp Zoom in on locus 1 x9 Zoom in on locus 2 x19 Gene: cd09652:cas6 Type: other Location: 201655-202326 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 202338-202718 bp Gene: cd09722:cas1 Type: universal Location: 202711-202950 bp Gene: cd09725:cas2 Type: universal Location: 202953-203216 bp CRISPR array Location: 203429-203972 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 203429-203972 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 341967-343270 bp Num of repeats: 19 Spacers: s9-s26 CRISPR array Location: 341967-343270 bp Num of repeats: 19 Spacers: s9-s26 Gene: cd09725:cas2 Type: universal Location: 343717-344007 bp Gene: cd09634:cas1 Type: universal Location: 344001-346271 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 346291-347235 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 347238-347648 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 347661-348500 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 348520-349659 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 349652-351454 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 351459-352868 bp Gene: unk Type: unknown Location: 352882-353361 bp Gene: cash17:cash17 Type: Type- Location: 353358-354785 bp Gene: unk Type: unknown Location: 354830-355609 bp Gene: unk Type: unknown Location: 355585-356211 bp Gene: cls000004:cas6 Type: other Location: 356229-356897 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 203429-203972 bp]: array | spacers
           [Locus range 341967-343270 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)