CRISPRone

CRISPRone report for SRR9713609

♦ Seq 1: NODE_2_length_434226_cov_17.172450

⇒Summary: seq-len = 434226 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 353604-357217 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 353604-354503 bp Gene: unk Type: unknown Location: 354500-355765 bp Gene: unk Type: unknown Location: 355773-356546 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 356549-357217 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4718_length_318_cov_1.448669

⇒Summary: seq-len = 318 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-315 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 1-315 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1465_length_845_cov_1.393671

⇒Summary: seq-len = 845 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-843 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 2-382 bp Gene: cd09642:cas8c Type: Subtype-I-C Location: 379-843 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_3_length_433066_cov_15.592662

⇒Summary: seq-len = 433066 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31640-46424 bp Zoom in on locus 1 x17 CRISPR array Location: 31640-32796 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 31640-32796 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09725:cas2 Type: universal Location: 33244-33534 bp Gene: cd09634:cas1 Type: universal Location: 33528-35798 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35818-36762 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36765-37175 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37188-38027 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38047-39186 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39179-40981 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 40986-42395 bp Gene: unk Type: unknown Location: 42409-42888 bp Gene: cash17:cash17 Type: Type- Location: 42885-44312 bp Gene: unk Type: unknown Location: 44357-45136 bp Gene: unk Type: unknown Location: 45112-45738 bp Gene: cls000004:cas6 Type: other Location: 45756-46424 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31640-32796 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NODE_1543_length_823_cov_1.404948

⇒Summary: seq-len = 823 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-821 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 2-211 bp Gene: cd09634:cas1 Type: universal Location: 216-821 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: NODE_743_length_1176_cov_2.165031

⇒Summary: seq-len = 1176 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1175 bp Zoom in on locus 1 Gene: pfam09709:cas8c Type: Subtype-I-C Location: 3-353 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 366-1175 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: NODE_12_length_148880_cov_17.965543

⇒Summary: seq-len = 148880 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138450-147975 bp Zoom in on locus 1 x37 Gene: cd09643:cas9 Type: Subtype-II-C Location: 138450-142760 bp Gene: unk Type: unknown Location: 142776-143300 bp Gene: unk Type: unknown Location: 143367-143675 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 143795-144727 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 144731-145063 bp CRISPR array Location: 145172-147975 bp Num of repeats: 37 Spacers: s1-s36 CRISPR array Location: 145172-147975 bp Num of repeats: 37 Spacers: s1-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 145172-147975 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)