CRISPRone

CRISPRone report for SRR9713610

♦ Seq 1: NODE_14_length_146464_cov_20.301170

⇒Summary: seq-len = 146464 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136035-145559 bp Zoom in on locus 1 x37 Gene: cd09643:cas9 Type: Subtype-II-C Location: 136035-140345 bp Gene: unk Type: unknown Location: 140361-140885 bp Gene: unk Type: unknown Location: 140952-141260 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 141380-142312 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 142316-142648 bp CRISPR array Location: 142757-145559 bp Num of repeats: 37 Spacers: s1-s36 CRISPR array Location: 142757-145559 bp Num of repeats: 37 Spacers: s1-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 142757-145559 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_2_length_433136_cov_17.606598

⇒Summary: seq-len = 433136 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 386580-401498 bp Zoom in on locus 1 x18 Gene: cls000004:cas6 Type: other Location: 386580-387311 bp Gene: unk Type: unknown Location: 387329-387955 bp Gene: unk Type: unknown Location: 387931-388710 bp Gene: cash17:cash17 Type: Type- Location: 388755-390182 bp Gene: unk Type: unknown Location: 390179-390658 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 390672-392081 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 392086-393888 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 393881-395020 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 395040-395879 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 395892-396302 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 396299-397249 bp Gene: cd09634:cas1 Type: universal Location: 397269-399539 bp Gene: cd09725:cas2 Type: universal Location: 399533-399823 bp CRISPR array Location: 400271-401498 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 400271-401498 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 400271-401498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1_length_479708_cov_18.513759

⇒Summary: seq-len = 479708 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122492-126105 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 122492-123160 bp Gene: unk Type: unknown Location: 123163-123936 bp Gene: unk Type: unknown Location: 123944-125209 bp Gene: pfam13280:WYL Type: other Location: 125206-126105 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)