CRISPRone

CRISPRone report for SRR9713616

♦ Seq 1: NODE_35_length_46134_cov_14.578745

⇒Summary: seq-len = 46134 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31642-45587 bp Zoom in on locus 1 x5 CRISPR array Location: 31642-31959 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 31642-31959 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09634:cas1 Type: universal Location: 32691-34961 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 34981-35931 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 35928-36338 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36351-37190 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 37210-38349 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 38342-40144 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 40149-41558 bp Gene: unk Type: unknown Location: 41572-42051 bp Gene: cash17:cash17 Type: Type- Location: 42048-43475 bp Gene: unk Type: unknown Location: 43520-44299 bp Gene: unk Type: unknown Location: 44275-44901 bp Gene: cls000004:cas6 Type: other Location: 44919-45587 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31642-31959 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_2_length_337955_cov_14.102054

⇒Summary: seq-len = 337955 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 265908-269521 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 265908-266807 bp Gene: unk Type: unknown Location: 266804-268069 bp Gene: unk Type: unknown Location: 268077-268850 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 268853-269521 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_23_length_83010_cov_14.615334

⇒Summary: seq-len = 83010 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75212-83011 bp Zoom in on locus 1 x13 antiRepeat Location: 75212-75257 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 75325-79635 bp Gene: unk Type: unknown Location: 79651-80175 bp Gene: unk Type: unknown Location: 80242-80550 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 80670-81602 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 81606-81938 bp CRISPR array Location: 82047-83011 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 82047-83011 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 82047-83011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_180_length_1422_cov_13.938552

⇒Summary: seq-len = 1422 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9-517 bp Zoom in on locus 1 x7 CRISPR array Location: 9-517 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 9-517 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9-517 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)