CRISPRone

CRISPRone report for SRR9713623

♦ Seq 1: NODE_6_length_121101_cov_5.922145

⇒Summary: seq-len = 121101 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97215-100828 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 97215-98114 bp Gene: unk Type: unknown Location: 98111-99376 bp Gene: unk Type: unknown Location: 99384-100157 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 100160-100828 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_54_length_31949_cov_5.201825

⇒Summary: seq-len = 31949 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18245-31204 bp Zoom in on locus 1 Gene: cls000004:cas6 Type: other Location: 18245-18976 bp Gene: unk Type: unknown Location: 18994-19620 bp Gene: unk Type: unknown Location: 19596-20375 bp Gene: cash17:cash17 Type: Type- Location: 20420-21847 bp Gene: unk Type: unknown Location: 21844-22323 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 22337-23746 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 23751-25553 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 25546-26685 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 26705-27544 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 27557-27967 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 27964-28914 bp Gene: cd09634:cas1 Type: universal Location: 28934-31204 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_87_length_18848_cov_5.256957

⇒Summary: seq-len = 18848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11-966 bp Zoom in on locus 1 x14 CRISPR array Location: 11-966 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 11-966 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11-966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)