CRISPRone

CRISPRone report for SRR9713628

♦ Seq 1: NODE_23_length_84531_cov_12.049493

⇒Summary: seq-len = 84531 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-9207 bp Zoom in on locus 1 x21 CRISPR array Location: 907-2485 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 907-2485 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2594-2926 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2930-3862 bp Gene: unk Type: unknown Location: 3982-4290 bp Gene: unk Type: unknown Location: 4357-4881 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4897-9207 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 907-2485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_12_length_158114_cov_11.062084

⇒Summary: seq-len = 158114 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12087-24680 bp Zoom in on locus 1 Gene: COG4804:PD-DExK Type: other Location: 12087-13100 bp Gene: pfam13280:WYL Type: other Location: 21067-21966 bp Gene: unk Type: unknown Location: 21963-23228 bp Gene: unk Type: unknown Location: 23236-24009 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 24012-24680 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_6_length_234362_cov_10.847529

⇒Summary: seq-len = 234362 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83404-97350 bp Zoom in on locus 1 x5 Gene: cls000004:cas6 Type: other Location: 83404-84072 bp Gene: unk Type: unknown Location: 84090-84716 bp Gene: unk Type: unknown Location: 84692-85471 bp Gene: cash17:cash17 Type: Type- Location: 85516-86943 bp Gene: unk Type: unknown Location: 86940-87419 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 87433-88842 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 88847-90649 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 90642-91781 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 91801-92640 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 92653-93063 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 93066-94010 bp Gene: cd09634:cas1 Type: universal Location: 94030-96300 bp Gene: cd09725:cas2 Type: universal Location: 96294-96584 bp CRISPR array Location: 97032-97350 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 97032-97350 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97032-97350 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)