CRISPRone

CRISPRone report for SRR9713630

♦ Seq 1: NODE_65_length_16765_cov_23.690904

⇒Summary: seq-len = 16765 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8068-16482 bp Zoom in on locus 1 x21 antiRepeat Location: 8068-8113 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 8181-12491 bp Gene: unk Type: unknown Location: 12507-13031 bp Gene: unk Type: unknown Location: 13098-13406 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 13526-14458 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 14462-14794 bp CRISPR array Location: 14903-16482 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 14903-16482 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 14903-16482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_20_length_102037_cov_19.921310

⇒Summary: seq-len = 102037 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56446-70392 bp Zoom in on locus 1 x5 Gene: cls000004:cas6 Type: other Location: 56446-57114 bp Gene: unk Type: unknown Location: 57132-57758 bp Gene: unk Type: unknown Location: 57734-58513 bp Gene: cash17:cash17 Type: Type- Location: 58558-59985 bp Gene: unk Type: unknown Location: 59982-60461 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 60475-61884 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 61889-63691 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 63684-64823 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 64843-65682 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 65695-66105 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 66108-67052 bp Gene: cd09634:cas1 Type: universal Location: 67072-69342 bp Gene: cd09725:cas2 Type: universal Location: 69336-69626 bp CRISPR array Location: 70074-70392 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 70074-70392 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70074-70392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_2_length_264280_cov_21.583805

⇒Summary: seq-len = 264280 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127233-130846 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 127233-128132 bp Gene: unk Type: unknown Location: 128129-129394 bp Gene: unk Type: unknown Location: 129402-130175 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 130178-130846 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)