CRISPRone

CRISPRone report for SRR9713631

♦ Seq 1: NODE_1067_length_691_cov_3.157233

⇒Summary: seq-len = 691 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16-676 bp Zoom in on locus 1 x9 CRISPR array Location: 16-676 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 16-676 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16-676 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_2_length_199353_cov_18.048545

⇒Summary: seq-len = 199353 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127306-130919 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 127306-128205 bp Gene: unk Type: unknown Location: 128202-129467 bp Gene: unk Type: unknown Location: 129475-130248 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 130251-130919 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_36_length_55054_cov_20.524773

⇒Summary: seq-len = 55054 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8698 bp Zoom in on locus 1 x21 CRISPR array Location: 285-1863 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 285-1863 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1972-2304 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2308-3240 bp Gene: unk Type: unknown Location: 3360-3668 bp Gene: unk Type: unknown Location: 3735-4259 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4275-8585 bp antiRepeat Location: 8653-8698 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-1863 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_1_length_362116_cov_18.840994

⇒Summary: seq-len = 362116 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137014-150959 bp Zoom in on locus 1 x5 CRISPR array Location: 137014-137331 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 137014-137331 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 137779-138069 bp Gene: cd09634:cas1 Type: universal Location: 138063-140333 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 140353-141297 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 141300-141710 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 141723-142562 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 142582-143721 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 143714-145516 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 145521-146930 bp Gene: unk Type: unknown Location: 146944-147423 bp Gene: cash17:cash17 Type: Type- Location: 147420-148847 bp Gene: unk Type: unknown Location: 148892-149671 bp Gene: unk Type: unknown Location: 149647-150273 bp Gene: cls000004:cas6 Type: other Location: 150291-150959 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 137014-137331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)