CRISPRone

CRISPRone report for SRR9713634

♦ Seq 1: NODE_22_length_84119_cov_7.271043

⇒Summary: seq-len = 84119 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 495-8795 bp Zoom in on locus 1 x21 CRISPR array Location: 495-2073 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 495-2073 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2182-2514 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2518-3450 bp Gene: unk Type: unknown Location: 3570-3878 bp Gene: unk Type: unknown Location: 3945-4469 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4485-8795 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 495-2073 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_442799_cov_6.727131

⇒Summary: seq-len = 442799 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119257-133202 bp Zoom in on locus 1 x5 CRISPR array Location: 119257-119574 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 119257-119574 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 120022-120312 bp Gene: cd09634:cas1 Type: universal Location: 120306-122576 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 122596-123540 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 123543-123953 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 123966-124805 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 124825-125964 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 125957-127759 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 127764-129173 bp Gene: unk Type: unknown Location: 129187-129666 bp Gene: cash17:cash17 Type: Type- Location: 129663-131090 bp Gene: unk Type: unknown Location: 131135-131914 bp Gene: unk Type: unknown Location: 131890-132516 bp Gene: cls000004:cas6 Type: other Location: 132534-133202 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 119257-119574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_2_length_322627_cov_6.810610

⇒Summary: seq-len = 322627 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185580-189193 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 185580-186479 bp Gene: unk Type: unknown Location: 186476-187741 bp Gene: unk Type: unknown Location: 187749-188522 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 188525-189193 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)