CRISPRone

CRISPRone report for SRR9713635

♦ Seq 1: NODE_2_length_402954_cov_15.019362

⇒Summary: seq-len = 402954 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133435-137048 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 133435-134103 bp Gene: unk Type: unknown Location: 134106-134879 bp Gene: unk Type: unknown Location: 134887-136152 bp Gene: pfam13280:WYL Type: other Location: 136149-137048 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_577515_cov_14.120227

⇒Summary: seq-len = 577515 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 531866-545875 bp Zoom in on locus 1 x5 Gene: cls000004:cas6 Type: other Location: 531866-532597 bp Gene: unk Type: unknown Location: 532615-533241 bp Gene: unk Type: unknown Location: 533217-533996 bp Gene: cash17:cash17 Type: Type- Location: 534041-535468 bp Gene: unk Type: unknown Location: 535465-535944 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 535958-537367 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 537372-539174 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 539167-540306 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 540326-541165 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 541178-541588 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 541585-542535 bp Gene: cd09634:cas1 Type: universal Location: 542555-544825 bp Gene: cd09725:cas2 Type: universal Location: 544819-545109 bp CRISPR array Location: 545557-545875 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 545557-545875 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 545557-545875 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_23_length_84531_cov_17.166923

⇒Summary: seq-len = 84531 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-9207 bp Zoom in on locus 1 x21 CRISPR array Location: 907-2485 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 907-2485 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2594-2926 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2930-3862 bp Gene: unk Type: unknown Location: 3982-4290 bp Gene: unk Type: unknown Location: 4357-4881 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4897-9207 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 907-2485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)