CRISPRone

CRISPRone report for SRR9713636

♦ Seq 1: NODE_23_length_84531_cov_26.213812

⇒Summary: seq-len = 84531 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75212-83626 bp Zoom in on locus 1 x21 antiRepeat Location: 75212-75257 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 75325-79635 bp Gene: unk Type: unknown Location: 79651-80175 bp Gene: unk Type: unknown Location: 80242-80550 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 80670-81602 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 81606-81938 bp CRISPR array Location: 82047-83626 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 82047-83626 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 82047-83626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_2_length_402954_cov_23.470043

⇒Summary: seq-len = 402954 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 265907-269520 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 265907-266806 bp Gene: unk Type: unknown Location: 266803-268068 bp Gene: unk Type: unknown Location: 268076-268849 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 268852-269520 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_29_length_73744_cov_24.541424

⇒Summary: seq-len = 73744 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28095-42104 bp Zoom in on locus 1 x5 Gene: cls000004:cas6 Type: other Location: 28095-28826 bp Gene: unk Type: unknown Location: 28844-29470 bp Gene: unk Type: unknown Location: 29446-30225 bp Gene: cash17:cash17 Type: Type- Location: 30270-31697 bp Gene: unk Type: unknown Location: 31694-32173 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 32187-33596 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 33601-35403 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 35396-36535 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36555-37394 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 37407-37817 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37814-38764 bp Gene: cd09634:cas1 Type: universal Location: 38784-41054 bp Gene: cd09725:cas2 Type: universal Location: 41048-41338 bp CRISPR array Location: 41786-42104 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 41786-42104 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41786-42104 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)