CRISPRone

CRISPRone report for SRR9713645

♦ Seq 1: NODE_22_length_59055_cov_46.997271

⇒Summary: seq-len = 59055 bp; # of CRISPR array = 0; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45505-58748 bp Zoom in on locus 1 Gene: cls000004:cas6 Type: other Location: 45505-46236 bp Gene: unk Type: unknown Location: 46254-46880 bp Gene: unk Type: unknown Location: 46856-47635 bp Gene: cash17:cash17 Type: Type- Location: 47680-49107 bp Gene: unk Type: unknown Location: 49104-49583 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 49597-51006 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 51011-52813 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 52806-53945 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 53965-54804 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 54817-55227 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 55224-56174 bp Gene: cd09634:cas1 Type: universal Location: 56194-58464 bp Gene: cd09725:cas2 Type: universal Location: 58458-58748 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_36_length_32741_cov_53.727284

⇒Summary: seq-len = 32741 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 155-1110 bp Zoom in on locus 1 x14 CRISPR array Location: 155-1110 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 155-1110 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 155-1110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_8_length_229092_cov_76.466802

⇒Summary: seq-len = 229092 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141301-144914 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 141301-141969 bp Gene: unk Type: unknown Location: 141972-142745 bp Gene: unk Type: unknown Location: 142753-144018 bp Gene: pfam13280:WYL Type: other Location: 144015-144914 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)