CRISPRone

CRISPRone report for SRR9713648

♦ Seq 1: NODE_6_length_232163_cov_41.554083

⇒Summary: seq-len = 232163 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84123-87736 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 84123-85022 bp Gene: unk Type: unknown Location: 85019-86284 bp Gene: unk Type: unknown Location: 86292-87065 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 87068-87736 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_38_length_37340_cov_28.426713

⇒Summary: seq-len = 37340 bp; # of CRISPR array = 0; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 497-13393 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 497-2767 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2787-3737 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 3734-4144 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4157-4996 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 5016-6155 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 6148-7950 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 7955-9364 bp Gene: unk Type: unknown Location: 9378-9857 bp Gene: cash17:cash17 Type: Type- Location: 9854-11281 bp Gene: unk Type: unknown Location: 11326-12105 bp Gene: unk Type: unknown Location: 12081-12707 bp Gene: cls000004:cas6 Type: other Location: 12725-13393 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_40_length_32832_cov_30.129603

⇒Summary: seq-len = 32832 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31633-32587 bp Zoom in on locus 1 x14 CRISPR array Location: 31633-32587 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 31633-32587 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31633-32587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)