CRISPRone

CRISPRone report for SRR9713655

♦ Seq 1: NODE_4_length_264794_cov_26.793215

⇒Summary: seq-len = 264794 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127233-130846 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 127233-128132 bp Gene: unk Type: unknown Location: 128129-129394 bp Gene: unk Type: unknown Location: 129402-130175 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 130178-130846 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_159_length_3290_cov_1.709428

⇒Summary: seq-len = 3290 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1138-3289 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 1138-1428 bp Gene: cd09721:cas1 Type: universal Location: 1438-2460 bp Gene: pfam01930:cas4 Type: Type-I Location: 2457-3122 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 3134-3289 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1795_length_896_cov_2.007134

⇒Summary: seq-len = 896 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-893 bp Zoom in on locus 1 Gene: cd09642:cas8c Type: Subtype-I-C Location: 1-543 bp Gene: cd09693:cas5 Type: Type-I Location: 540-893 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_41_length_40510_cov_27.420986

⇒Summary: seq-len = 40510 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8698 bp Zoom in on locus 1 x21 CRISPR array Location: 285-1863 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 285-1863 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1972-2304 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2308-3240 bp Gene: unk Type: unknown Location: 3360-3668 bp Gene: unk Type: unknown Location: 3735-4259 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4275-8585 bp antiRepeat Location: 8653-8698 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-1863 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NODE_38_length_46134_cov_27.771566

⇒Summary: seq-len = 46134 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31642-45587 bp Zoom in on locus 1 x5 CRISPR array Location: 31642-31959 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 31642-31959 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09634:cas1 Type: universal Location: 32691-34961 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 34981-35931 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 35928-36338 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36351-37190 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 37210-38349 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 38342-40144 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 40149-41558 bp Gene: unk Type: unknown Location: 41572-42051 bp Gene: cash17:cash17 Type: Type- Location: 42048-43475 bp Gene: unk Type: unknown Location: 43520-44299 bp Gene: unk Type: unknown Location: 44275-44901 bp Gene: cls000004:cas6 Type: other Location: 44919-45587 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31642-31959 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: NODE_1158_length_1201_cov_1.845550

⇒Summary: seq-len = 1201 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1198 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 3-797 bp Gene: pfam09704:cas5 Type: Type-I Location: 842-1198 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: NODE_609_length_1709_cov_1.674123

⇒Summary: seq-len = 1709 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1708 bp Zoom in on locus 1 Gene: pfam09709:cas8c Type: Subtype-I-C Location: 1-1059 bp Gene: pfam05107:cas7b Type: Type-I Location: 1085-1708 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)