CRISPRone

CRISPRone report for SRR9713656

♦ Seq 1: NODE_1690_length_260_cov_1.751220

⇒Summary: seq-len = 260 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39-239 bp Zoom in on locus 1 x3 CRISPR array Location: 39-239 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 39-239 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39-239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4_length_229979_cov_15.444643

⇒Summary: seq-len = 229979 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133553-137166 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 133553-134221 bp Gene: unk Type: unknown Location: 134224-134997 bp Gene: unk Type: unknown Location: 135005-136270 bp Gene: pfam13280:WYL Type: other Location: 136267-137166 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_7_length_197498_cov_18.350537

⇒Summary: seq-len = 197498 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137014-150959 bp Zoom in on locus 1 x5 CRISPR array Location: 137014-137331 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 137014-137331 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 137779-138069 bp Gene: cd09634:cas1 Type: universal Location: 138063-140333 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 140353-141297 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 141300-141710 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 141723-142562 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 142582-143721 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 143714-145516 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 145521-146930 bp Gene: unk Type: unknown Location: 146944-147423 bp Gene: cash17:cash17 Type: Type- Location: 147420-148847 bp Gene: unk Type: unknown Location: 148892-149671 bp Gene: unk Type: unknown Location: 149647-150273 bp Gene: cls000004:cas6 Type: other Location: 150291-150959 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 137014-137331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_22_length_84531_cov_16.096513

⇒Summary: seq-len = 84531 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-9207 bp Zoom in on locus 1 x21 CRISPR array Location: 907-2485 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 907-2485 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2594-2926 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2930-3862 bp Gene: unk Type: unknown Location: 3982-4290 bp Gene: unk Type: unknown Location: 4357-4881 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4897-9207 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 907-2485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)