CRISPRone

CRISPRone report for SRR9713657

♦ Seq 1: NODE_31_length_66168_cov_9.072709

⇒Summary: seq-len = 66168 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56962-65263 bp Zoom in on locus 1 x21 Gene: cd09643:cas9 Type: Subtype-II-C Location: 56962-61272 bp Gene: unk Type: unknown Location: 61288-61812 bp Gene: unk Type: unknown Location: 61879-62187 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 62307-63239 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 63243-63575 bp CRISPR array Location: 63684-65263 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 63684-65263 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63684-65263 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_2_length_322612_cov_8.858041

⇒Summary: seq-len = 322612 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133435-137048 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 133435-134103 bp Gene: unk Type: unknown Location: 134106-134879 bp Gene: unk Type: unknown Location: 134887-136152 bp Gene: pfam13280:WYL Type: other Location: 136149-137048 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1_length_577516_cov_8.373743

⇒Summary: seq-len = 577516 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31642-45587 bp Zoom in on locus 1 x5 CRISPR array Location: 31642-31959 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 31642-31959 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 32407-32697 bp Gene: cd09634:cas1 Type: universal Location: 32691-34961 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 34981-35925 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 35928-36338 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36351-37190 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 37210-38349 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 38342-40144 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 40149-41558 bp Gene: unk Type: unknown Location: 41572-42051 bp Gene: cash17:cash17 Type: Type- Location: 42048-43475 bp Gene: unk Type: unknown Location: 43520-44299 bp Gene: unk Type: unknown Location: 44275-44901 bp Gene: cls000004:cas6 Type: other Location: 44919-45587 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31642-31959 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)