CRISPRone

CRISPRone report for SRR9713703

♦ Seq 1: NODE_11_length_152278_cov_16.608587

⇒Summary: seq-len = 152278 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8743 bp Zoom in on locus 1 x23 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2130-2462 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2466-3398 bp Gene: unk Type: unknown Location: 3518-3826 bp Gene: unk Type: unknown Location: 3893-4417 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4433-8743 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-2021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_5_length_310360_cov_11.515670

⇒Summary: seq-len = 310360 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106390-108706 bp Zoom in on locus 1 x9 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 107145-107408 bp Gene: cd09722:cas1 Type: universal Location: 107411-107650 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107643-108023 bp Gene: cd09652:cas6 Type: other Location: 108035-108706 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106390-106932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1_length_506911_cov_13.639513

⇒Summary: seq-len = 506911 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_12_length_141345_cov_12.092236

⇒Summary: seq-len = 141345 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94711-109705 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 94711-95442 bp Gene: unk Type: unknown Location: 95460-96086 bp Gene: unk Type: unknown Location: 96062-96841 bp Gene: cash17:cash17 Type: Type- Location: 96886-98313 bp Gene: unk Type: unknown Location: 98310-98789 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98803-100212 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100217-102019 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102012-103151 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103171-104010 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104023-104433 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104430-105380 bp Gene: cd09634:cas1 Type: universal Location: 105400-107670 bp Gene: cd09725:cas2 Type: universal Location: 107664-107954 bp CRISPR array Location: 108401-109705 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 108401-109705 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108401-109705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)