CRISPRone

CRISPRone report for SRR9713705

♦ Seq 1: NODE_18_length_82601_cov_9.217467

⇒Summary: seq-len = 82601 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60668-62985 bp Zoom in on locus 1 x9 Gene: cd09652:cas6 Type: other Location: 60668-61339 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 61351-61731 bp Gene: cd09722:cas1 Type: universal Location: 61724-61963 bp Gene: cd09725:cas2 Type: universal Location: 61966-62229 bp CRISPR array Location: 62442-62985 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 62442-62985 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 62442-62985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_1_length_506911_cov_11.461989

⇒Summary: seq-len = 506911 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80284-83897 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 80284-80952 bp Gene: unk Type: unknown Location: 80955-81728 bp Gene: unk Type: unknown Location: 81736-83001 bp Gene: pfam13280:WYL Type: other Location: 82998-83897 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_14_length_99830_cov_14.706640

⇒Summary: seq-len = 99830 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-8743 bp Zoom in on locus 1 x23 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 285-2021 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2130-2462 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2466-3398 bp Gene: unk Type: unknown Location: 3518-3826 bp Gene: unk Type: unknown Location: 3893-4417 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4433-8743 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-2021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_4_length_317952_cov_9.392728

⇒Summary: seq-len = 317952 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31647-46577 bp Zoom in on locus 1 x19 CRISPR array Location: 31647-32950 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 31647-32950 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09725:cas2 Type: universal Location: 33397-33687 bp Gene: cd09634:cas1 Type: universal Location: 33681-35951 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35971-36921 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36918-37328 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37341-38180 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38200-39339 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39332-41134 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 41139-42548 bp Gene: unk Type: unknown Location: 42562-43041 bp Gene: cash17:cash17 Type: Type- Location: 43038-44465 bp Gene: unk Type: unknown Location: 44510-45289 bp Gene: unk Type: unknown Location: 45265-45891 bp Gene: cls000004:cas6 Type: other Location: 45909-46577 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31647-32950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)