CRISPRone

CRISPRone report for SRR9713708

♦ Seq 1: NODE_1_length_473151_cov_7.381405

⇒Summary: seq-len = 473151 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_12_length_152833_cov_9.767519

⇒Summary: seq-len = 152833 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 994-9411 bp Zoom in on locus 1 x21 CRISPR array Location: 994-2576 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 994-2576 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2685-3017 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3021-3953 bp Gene: unk Type: unknown Location: 4073-4381 bp Gene: unk Type: unknown Location: 4448-4972 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4988-9298 bp antiRepeat Location: 9366-9411 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 994-2576 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_6_length_223588_cov_6.018047

⇒Summary: seq-len = 223588 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201655-203972 bp Zoom in on locus 1 x9 Gene: cd09652:cas6 Type: other Location: 201655-202326 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 202338-202718 bp Gene: cd09722:cas1 Type: universal Location: 202711-202950 bp Gene: cd09725:cas2 Type: universal Location: 202953-203216 bp CRISPR array Location: 203429-203972 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 203429-203972 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 203429-203972 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_5_length_227806_cov_6.354514

⇒Summary: seq-len = 227806 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94952-109946 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 94952-95683 bp Gene: unk Type: unknown Location: 95701-96327 bp Gene: unk Type: unknown Location: 96303-97082 bp Gene: cash17:cash17 Type: Type- Location: 97127-98554 bp Gene: unk Type: unknown Location: 98551-99030 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 99044-100453 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100458-102260 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102253-103392 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103412-104251 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104264-104674 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104671-105621 bp Gene: cd09634:cas1 Type: universal Location: 105641-107911 bp Gene: cd09725:cas2 Type: universal Location: 107905-108195 bp CRISPR array Location: 108642-109946 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 108642-109946 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108642-109946 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)