CRISPRone

CRISPRone report for SRR9713711

♦ Seq 1: NODE_12_length_141355_cov_16.709851

⇒Summary: seq-len = 141355 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94721-109715 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 94721-95452 bp Gene: unk Type: unknown Location: 95470-96096 bp Gene: unk Type: unknown Location: 96072-96851 bp Gene: cash17:cash17 Type: Type- Location: 96896-98323 bp Gene: unk Type: unknown Location: 98320-98799 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98813-100222 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100227-102029 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102022-103161 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103181-104020 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104033-104443 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104440-105390 bp Gene: cd09634:cas1 Type: universal Location: 105410-107680 bp Gene: cd09725:cas2 Type: universal Location: 107674-107964 bp CRISPR array Location: 108411-109715 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 108411-109715 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108411-109715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_5_length_310360_cov_15.637421

⇒Summary: seq-len = 310360 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106390-108706 bp Zoom in on locus 1 x9 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106390-106932 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 107145-107408 bp Gene: cd09722:cas1 Type: universal Location: 107411-107650 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107643-108023 bp Gene: cd09652:cas6 Type: other Location: 108035-108706 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106390-106932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_1_length_498071_cov_19.305611

⇒Summary: seq-len = 498071 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_11_length_153585_cov_24.918557

⇒Summary: seq-len = 153585 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1167-9738 bp Zoom in on locus 1 x23 CRISPR array Location: 1167-2903 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1167-2903 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3012-3344 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3348-4280 bp Gene: unk Type: unknown Location: 4400-4708 bp Gene: unk Type: unknown Location: 4775-5299 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5315-9625 bp antiRepeat Location: 9693-9738 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1167-2903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)