CRISPRone

CRISPRone report for SRR9713717

♦ Seq 1: NODE_1_length_477996_cov_21.612000

⇒Summary: seq-len = 477996 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104090-107703 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 104090-104758 bp Gene: unk Type: unknown Location: 104761-105534 bp Gene: unk Type: unknown Location: 105542-106807 bp Gene: pfam13280:WYL Type: other Location: 106804-107703 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_14_length_141110_cov_20.163979

⇒Summary: seq-len = 141110 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30980-45554 bp Zoom in on locus 1 x14 CRISPR array Location: 30980-31926 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 30980-31926 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09725:cas2 Type: universal Location: 32374-32664 bp Gene: cd09634:cas1 Type: universal Location: 32658-34928 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 34948-35898 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 35895-36305 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36318-37157 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 37177-38316 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 38309-40111 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 40116-41525 bp Gene: unk Type: unknown Location: 41539-42018 bp Gene: cash17:cash17 Type: Type- Location: 42015-43442 bp Gene: unk Type: unknown Location: 43487-44266 bp Gene: unk Type: unknown Location: 44242-44868 bp Gene: cls000004:cas6 Type: other Location: 44886-45554 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30980-31926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_123_length_879_cov_1.283981

⇒Summary: seq-len = 879 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-832 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 2-496 bp Gene: pfam09827:cas2 Type: universal Location: 500-832 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_1255_length_227_cov_1.831395

⇒Summary: seq-len = 227 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43-166 bp Zoom in on locus 1 x2 CRISPR array Location: 43-166 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 43-166 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43-166 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)