CRISPRone

CRISPRone report for SRR9713720

♦ Seq 1: NODE_1_length_331224_cov_15.158457

⇒Summary: seq-len = 331224 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 316848-331213 bp Zoom in on locus 1 x10 Gene: cls000004:cas6 Type: other Location: 316848-317579 bp Gene: unk Type: unknown Location: 317597-318223 bp Gene: unk Type: unknown Location: 318199-318978 bp Gene: cash17:cash17 Type: Type- Location: 319023-320450 bp Gene: unk Type: unknown Location: 320447-320926 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 320940-322349 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 322354-324156 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 324149-325288 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 325308-326147 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 326160-326570 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 326567-327517 bp Gene: cd09634:cas1 Type: universal Location: 327537-329807 bp Gene: cd09725:cas2 Type: universal Location: 329801-330091 bp CRISPR array Location: 330539-331213 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 330539-331213 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 330539-331213 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_9_length_154427_cov_16.828343

⇒Summary: seq-len = 154427 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10078-13691 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 10078-10977 bp Gene: unk Type: unknown Location: 10974-12239 bp Gene: unk Type: unknown Location: 12247-13020 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 13023-13691 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_50_length_31953_cov_15.347984

⇒Summary: seq-len = 31953 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31633-31948 bp Zoom in on locus 1 x5 CRISPR array Location: 31633-31948 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 31633-31948 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31633-31948 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)