CRISPRone

CRISPRone report for SRR9713721

♦ Seq 1: NODE_8_length_154427_cov_16.130237

⇒Summary: seq-len = 154427 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10078-13691 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 10078-10977 bp Gene: unk Type: unknown Location: 10974-12239 bp Gene: unk Type: unknown Location: 12247-13020 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 13023-13691 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_14_length_109211_cov_14.402946

⇒Summary: seq-len = 109211 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20-14390 bp Zoom in on locus 1 x11 CRISPR array Location: 20-762 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 20-762 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09634:cas1 Type: universal Location: 1494-3764 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3784-4734 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4731-5141 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 5154-5993 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 6013-7152 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 7145-8947 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 8952-10361 bp Gene: unk Type: unknown Location: 10375-10854 bp Gene: cash17:cash17 Type: Type- Location: 10851-12278 bp Gene: unk Type: unknown Location: 12323-13102 bp Gene: unk Type: unknown Location: 13078-13704 bp Gene: cls000004:cas6 Type: other Location: 13722-14390 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20-762 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_10_length_134600_cov_13.329057

⇒Summary: seq-len = 134600 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-243 bp Zoom in on locus 1 x4 CRISPR array Location: 0-243 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-243 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)