CRISPRone

CRISPRone report for SRR9713722

♦ Seq 1: NODE_8_length_157554_cov_18.075740

⇒Summary: seq-len = 157554 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143864-147477 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 143864-144532 bp Gene: unk Type: unknown Location: 144535-145308 bp Gene: unk Type: unknown Location: 145316-146581 bp Gene: pfam13280:WYL Type: other Location: 146578-147477 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_53_length_31900_cov_15.770168

⇒Summary: seq-len = 31900 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31638-31884 bp Zoom in on locus 1 x4 CRISPR array Location: 31638-31884 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 31638-31884 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31638-31884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_13_length_109161_cov_16.212995

⇒Summary: seq-len = 109161 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94709-109143 bp Zoom in on locus 1 x11 Gene: cls000004:cas6 Type: other Location: 94709-95440 bp Gene: unk Type: unknown Location: 95458-96084 bp Gene: unk Type: unknown Location: 96060-96839 bp Gene: cash17:cash17 Type: Type- Location: 96884-98311 bp Gene: unk Type: unknown Location: 98308-98787 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98801-100210 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100215-102017 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102010-103149 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103169-104008 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104021-104431 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104428-105378 bp Gene: cd09634:cas1 Type: universal Location: 105398-107668 bp Gene: cd09725:cas2 Type: universal Location: 107662-107952 bp CRISPR array Location: 108400-109143 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 108400-109143 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108400-109143 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)