CRISPRone

CRISPRone report for SRR9713723

♦ Seq 1: NODE_10_length_154427_cov_15.413249

⇒Summary: seq-len = 154427 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140737-144350 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 140737-141405 bp Gene: unk Type: unknown Location: 141408-142181 bp Gene: unk Type: unknown Location: 142189-143454 bp Gene: pfam13280:WYL Type: other Location: 143451-144350 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_12_length_134916_cov_12.995595

⇒Summary: seq-len = 134916 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 134451-134911 bp Zoom in on locus 1 x7 CRISPR array Location: 134451-134911 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 134451-134911 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 134451-134911 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_15_length_108944_cov_13.955193

⇒Summary: seq-len = 108944 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94712-108932 bp Zoom in on locus 1 x8 Gene: cls000004:cas6 Type: other Location: 94712-95443 bp Gene: unk Type: unknown Location: 95461-96087 bp Gene: unk Type: unknown Location: 96063-96842 bp Gene: cash17:cash17 Type: Type- Location: 96887-98314 bp Gene: unk Type: unknown Location: 98311-98790 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98804-100213 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100218-102020 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102013-103152 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103172-104011 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104024-104434 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104431-105381 bp Gene: cd09634:cas1 Type: universal Location: 105401-107671 bp Gene: cd09725:cas2 Type: universal Location: 107665-107955 bp CRISPR array Location: 108403-108932 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 108403-108932 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108403-108932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)