CRISPRone

CRISPRone report for SRR9713724

♦ Seq 1: NODE_8_length_154427_cov_16.477204

⇒Summary: seq-len = 154427 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10078-13691 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 10078-10977 bp Gene: unk Type: unknown Location: 10974-12239 bp Gene: unk Type: unknown Location: 12247-13020 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 13023-13691 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_14_length_109080_cov_15.219757

⇒Summary: seq-len = 109080 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94711-109076 bp Zoom in on locus 1 x10 Gene: cls000004:cas6 Type: other Location: 94711-95442 bp Gene: unk Type: unknown Location: 95460-96086 bp Gene: unk Type: unknown Location: 96062-96841 bp Gene: cash17:cash17 Type: Type- Location: 96886-98313 bp Gene: unk Type: unknown Location: 98310-98789 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98803-100212 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100217-102019 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102012-103151 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103171-104010 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104023-104433 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104430-105380 bp Gene: cd09634:cas1 Type: universal Location: 105400-107670 bp Gene: cd09725:cas2 Type: universal Location: 107664-107954 bp CRISPR array Location: 108402-109076 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 108402-109076 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108402-109076 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_54_length_31966_cov_15.022124

⇒Summary: seq-len = 31966 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31638-31953 bp Zoom in on locus 1 x5 CRISPR array Location: 31638-31953 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 31638-31953 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31638-31953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)