CRISPRone

CRISPRone report for SRR9713742

♦ Seq 1: NODE_1_length_506911_cov_25.125497

⇒Summary: seq-len = 506911 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 423015-426628 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 423015-423914 bp Gene: unk Type: unknown Location: 423911-425176 bp Gene: unk Type: unknown Location: 425184-425957 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 425960-426628 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_4_length_309998_cov_20.998764

⇒Summary: seq-len = 309998 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106028-108344 bp Zoom in on locus 1 x9 CRISPR array Location: 106028-106570 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 106028-106570 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 106783-107046 bp Gene: cd09722:cas1 Type: universal Location: 107049-107288 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 107281-107661 bp Gene: cd09652:cas6 Type: other Location: 107673-108344 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106028-106570 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_10_length_152603_cov_31.131696

⇒Summary: seq-len = 152603 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 610-9181 bp Zoom in on locus 1 x23 CRISPR array Location: 610-2346 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 610-2346 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2455-2787 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2791-3723 bp Gene: unk Type: unknown Location: 3843-4151 bp Gene: unk Type: unknown Location: 4218-4742 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4758-9068 bp antiRepeat Location: 9136-9181 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 610-2346 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_19_length_70625_cov_20.341958

⇒Summary: seq-len = 70625 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23991-38985 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 23991-24722 bp Gene: unk Type: unknown Location: 24740-25366 bp Gene: unk Type: unknown Location: 25342-26121 bp Gene: cash17:cash17 Type: Type- Location: 26166-27593 bp Gene: unk Type: unknown Location: 27590-28069 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 28083-29492 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 29497-31299 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 31292-32431 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 32451-33290 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 33303-33713 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 33710-34660 bp Gene: cd09634:cas1 Type: universal Location: 34680-36950 bp Gene: cd09725:cas2 Type: universal Location: 36944-37234 bp CRISPR array Location: 37681-38985 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 37681-38985 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37681-38985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)