CRISPRone

CRISPRone report for SRR9713743

♦ Seq 1: NODE_3_length_310597_cov_15.083580

⇒Summary: seq-len = 310597 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80037-83650 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 80037-80705 bp Gene: unk Type: unknown Location: 80708-81481 bp Gene: unk Type: unknown Location: 81489-82754 bp Gene: pfam13280:WYL Type: other Location: 82751-83650 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_15_length_141339_cov_13.560927

⇒Summary: seq-len = 141339 bp; # of CRISPR array = 1; # of cas gene = 9  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31642-46572 bp Zoom in on locus 1 x19 CRISPR array Location: 31642-32945 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 31642-32945 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09634:cas1 Type: universal Location: 33676-35946 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 35966-36916 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 36913-37323 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37336-38175 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 38195-39334 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 39327-41129 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 41134-42543 bp Gene: unk Type: unknown Location: 42557-43036 bp Gene: cash17:cash17 Type: Type- Location: 43033-44460 bp Gene: unk Type: unknown Location: 44505-45284 bp Gene: unk Type: unknown Location: 45260-45886 bp Gene: cls000004:cas6 Type: other Location: 45904-46572 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31642-32945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_4_length_310362_cov_13.065161

⇒Summary: seq-len = 310362 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201657-203974 bp Zoom in on locus 1 x9 Gene: cd09652:cas6 Type: other Location: 201657-202328 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 202340-202720 bp Gene: cd09722:cas1 Type: universal Location: 202713-202952 bp Gene: cd09725:cas2 Type: universal Location: 202955-203218 bp CRISPR array Location: 203431-203974 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 203431-203974 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 203431-203974 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_8_length_245999_cov_20.064767

⇒Summary: seq-len = 245999 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1176-9747 bp Zoom in on locus 1 x23 CRISPR array Location: 1176-2912 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1176-2912 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3021-3353 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3357-4289 bp Gene: unk Type: unknown Location: 4409-4717 bp Gene: unk Type: unknown Location: 4784-5308 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5324-9634 bp antiRepeat Location: 9702-9747 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1176-2912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)