CRISPRone

CRISPRone report for SRR9713744

♦ Seq 1: NODE_13_length_141443_cov_14.017689

⇒Summary: seq-len = 141443 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94708-109702 bp Zoom in on locus 1 x19 Gene: cls000004:cas6 Type: other Location: 94708-95439 bp Gene: unk Type: unknown Location: 95457-96083 bp Gene: unk Type: unknown Location: 96059-96838 bp Gene: cash17:cash17 Type: Type- Location: 96883-98310 bp Gene: unk Type: unknown Location: 98307-98786 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 98800-100209 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 100214-102016 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 102009-103148 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 103168-104007 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 104020-104430 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 104427-105377 bp Gene: cd09634:cas1 Type: universal Location: 105397-107667 bp Gene: cd09725:cas2 Type: universal Location: 107661-107951 bp CRISPR array Location: 108398-109702 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 108398-109702 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108398-109702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NODE_8_length_223588_cov_13.086828

⇒Summary: seq-len = 223588 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19618-21934 bp Zoom in on locus 1 x9 CRISPR array Location: 19618-20160 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 19618-20160 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 20373-20636 bp Gene: cd09722:cas1 Type: universal Location: 20639-20878 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 20871-21251 bp Gene: cd09652:cas6 Type: other Location: 21263-21934 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19618-20160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NODE_12_length_153594_cov_20.556647

⇒Summary: seq-len = 153594 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1176-9747 bp Zoom in on locus 1 x23 CRISPR array Location: 1176-2912 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1176-2912 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3021-3353 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3357-4289 bp Gene: unk Type: unknown Location: 4409-4717 bp Gene: unk Type: unknown Location: 4784-5308 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5324-9634 bp antiRepeat Location: 9702-9747 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1176-2912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NODE_1_length_506664_cov_15.875604

⇒Summary: seq-len = 506664 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80037-83650 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 80037-80705 bp Gene: unk Type: unknown Location: 80708-81481 bp Gene: unk Type: unknown Location: 81489-82754 bp Gene: pfam13280:WYL Type: other Location: 82751-83650 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)