CRISPRone

CRISPRone report for GCA_001682215.1_ASM168221v1

♦ Seq 1: CP012706.1 Bacteroides fragilis strain S14 chromosome, complete genome

⇒Summary: seq-len = 4902215 bp; # of CRISPR array = 4; # of cas gene = 19  (type I, II, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 234150-234297 bp 2 Locus 2: 1971359-1986628 bp 3 Locus 3: 2133309-2135625 bp 4 Locus 4: 3120287-3123900 bp 5 Locus 5: 3758696-3767414 bp Zoom in on locus 1 x3 Zoom in on locus 2 x24 Zoom in on locus 3 x9 Zoom in on locus 4 Zoom in on locus 5 x25 CRISPR array Location: 234150-234297 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 234150-234297 bp Num of repeats: 3 Spacers: s1-s2 Gene: cls000004:cas6 Type: other Location: 1971359-1972027 bp Gene: unk Type: unknown Location: 1972045-1972671 bp Gene: unk Type: unknown Location: 1972647-1973426 bp Gene: cash17:cash17 Type: Type- Location: 1973471-1974898 bp Gene: unk Type: unknown Location: 1974895-1975374 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 1975388-1976797 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 1976802-1978604 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 1978597-1979736 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 1979756-1980595 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 1980608-1981018 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 1981021-1981965 bp Gene: cd09634:cas1 Type: universal Location: 1981985-1984255 bp Gene: cd09725:cas2 Type: universal Location: 1984249-1984539 bp CRISPR array Location: 1984987-1986628 bp Num of repeats: 24 Spacers: s3-s25 CRISPR array Location: 1984987-1986628 bp Num of repeats: 24 Spacers: s3-s25 CRISPR array Location: 2133309-2133851 bp Num of repeats: 9 Spacers: s26-s33 CRISPR array Location: 2133309-2133851 bp Num of repeats: 9 Spacers: s26-s33 Gene: cd09725:cas2 Type: universal Location: 2134064-2134327 bp Gene: cd09722:cas1 Type: universal Location: 2134330-2134569 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 2134562-2134942 bp Gene: cd09652:cas6 Type: other Location: 2134954-2135625 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 3120287-3120955 bp Gene: unk Type: unknown Location: 3120958-3121731 bp Gene: unk Type: unknown Location: 3121739-3123004 bp Gene: pfam13280:WYL Type: other Location: 3123001-3123900 bp CRISPR array Location: 3758696-3760579 bp Num of repeats: 25 Spacers: s34-s57 CRISPR array Location: 3758696-3760579 bp Num of repeats: 25 Spacers: s34-s57 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3760688-3761020 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3761024-3761956 bp Gene: unk Type: unknown Location: 3762076-3762384 bp Gene: unk Type: unknown Location: 3762451-3762975 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 3762991-3767301 bp antiRepeat Location: 3767369-3767414 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 234150-234297 bp]: array | spacers
           [Locus range 1984987-1986628 bp]: array | spacers
           [Locus range 2133309-2133851 bp]: array | spacers
           [Locus range 3758696-3760579 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)