CRISPRone

CRISPRone report for GCA_000193715.2_ASM19371v2

♦ Seq 1: ADEJ01000862.1 Clostridioides difficile 6534 contig_862, whole genome shotgun sequence

⇒Summary: seq-len = 7846 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1010-1253 bp Zoom in on locus 1 x4 CRISPR array Location: 1010-1253 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1010-1253 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1010-1253 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: ADEJ01001008.1 Clostridioides difficile 6534 contig_1008, whole genome shotgun sequence

⇒Summary: seq-len = 862 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 430-855 bp Zoom in on locus 1 x7 CRISPR array Location: 430-855 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 430-855 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 430-855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: ADEJ01000240.1 Clostridioides difficile 6534 contig_240, whole genome shotgun sequence

⇒Summary: seq-len = 5386 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3232-4245 bp Zoom in on locus 1 x16 CRISPR array Location: 3232-4245 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 3232-4245 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3232-4245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: ADEJ01000256.1 Clostridioides difficile 6534 contig_256, whole genome shotgun sequence

⇒Summary: seq-len = 5264 bp; # of CRISPR array = 1; # of cas gene = 5  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 830-5261 bp Zoom in on locus 1 x22 CRISPR array Location: 830-2237 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 830-2237 bp Num of repeats: 22 Spacers: s1-s21 Gene: pfam09827:cas2 Type: universal Location: 2421-2588 bp Gene: cd09722:cas1 Type: universal Location: 2691-3488 bp Gene: cd09722:cas1 Type: universal Location: 3512-3670 bp Gene: pfam01930:cas4 Type: Type-I Location: 3673-4191 bp Gene: cd09639:cas3 Type: Type-I Location: 4239-5261 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 830-2237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: ADEJ01000414.1 Clostridioides difficile 6534 contig_414, whole genome shotgun sequence

⇒Summary: seq-len = 704 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 535-687 bp Zoom in on locus 1 x3 CRISPR array Location: 535-687 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 535-687 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 535-687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: ADEJ01000445.1 Clostridioides difficile 6534 contig_445, whole genome shotgun sequence

⇒Summary: seq-len = 5235 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-5234 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 2-562 bp Gene: unk Type: unknown Location: 704-1249 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 1304-1810 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2001-2444 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2446-3360 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3362-4063 bp Gene: cd09641:cas3HD Type: Type-I Location: 4074-5234 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: ADEJ01000016.1 Clostridioides difficile 6534 contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 9802 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4065-5272 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 4065-4370 bp Gene: COG1518:cas1 Type: universal Location: 4367-5272 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: ADEJ01001093.1 Clostridioides difficile 6534 contig_1093, whole genome shotgun sequence

⇒Summary: seq-len = 8215 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7620-8180 bp Zoom in on locus 1 x9 CRISPR array Location: 7620-8180 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7620-8180 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7620-8180 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: ADEJ01000494.1 Clostridioides difficile 6534 contig_494, whole genome shotgun sequence

⇒Summary: seq-len = 6929 bp; # of CRISPR array = 0; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68-5825 bp Zoom in on locus 1 Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 68-1543 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1563-1820 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1961-2578 bp Gene: cd09693:cas5 Type: Type-I Location: 2594-3091 bp Gene: unk Type: unknown Location: 3121-3390 bp Gene: cd09641:cas3HD Type: Type-I Location: 3417-3731 bp Gene: cd09641:cas3HD Type: Type-I Location: 3772-3909 bp Gene: COG1203:cas3 Type: Type-I Location: 3993-5825 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: ADEJ01001158.1 Clostridioides difficile 6534 contig_1158, whole genome shotgun sequence

⇒Summary: seq-len = 2010 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1253-2008 bp Zoom in on locus 1 x12 CRISPR array Location: 1253-2008 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1253-2008 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1253-2008 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: ADEJ01001100.1 Clostridioides difficile 6534 contig_1100, whole genome shotgun sequence

⇒Summary: seq-len = 3717 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3201-3688 bp Zoom in on locus 1 x8 CRISPR array Location: 3201-3688 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3201-3688 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3201-3688 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: ADEJ01000566.1 Clostridioides difficile 6534 contig_566, whole genome shotgun sequence

⇒Summary: seq-len = 3652 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2207-3091 bp Zoom in on locus 1 x14 CRISPR array Location: 2207-3091 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 2207-3091 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2207-3091 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: ADEJ01001002.1 Clostridioides difficile 6534 contig_1002, whole genome shotgun sequence

⇒Summary: seq-len = 521 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-232 bp Zoom in on locus 1 x4 CRISPR array Location: 1-232 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-232 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-232 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: ADEJ01000232.1 Clostridioides difficile 6534 contig_232, whole genome shotgun sequence

⇒Summary: seq-len = 4125 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3872-4031 bp Zoom in on locus 1 x3 CRISPR array Location: 3872-4031 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3872-4031 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3872-4031 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)