CRISPRone

CRISPRone report for GCA_000451045.2_ASM45104v2

♦ Seq 1: AVLJ01000444.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.445, whole genome shotgun sequence

⇒Summary: seq-len = 8851 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 233-720 bp Zoom in on locus 1 x8 CRISPR array Location: 233-720 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 233-720 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 233-720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLJ01000721.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.722, whole genome shotgun sequence

⇒Summary: seq-len = 8120 bp; # of CRISPR array = 0; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-8035 bp Zoom in on locus 1 Gene: pfam01930:cas4 Type: Type-I Location: 2-451 bp Gene: COG1203:cas3 Type: Type-I Location: 499-2820 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2831-3532 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3534-4448 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 4450-6300 bp Gene: pfam01881:cas6 Type: other Location: 6306-7100 bp Gene: pfam13280:WYL Type: other Location: 7121-8035 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLJ01000644.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.645, whole genome shotgun sequence

⇒Summary: seq-len = 5720 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3754-3914 bp Zoom in on locus 1 x3 CRISPR array Location: 3754-3914 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3754-3914 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3754-3914 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLJ01000443.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.444, whole genome shotgun sequence

⇒Summary: seq-len = 2998 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 618-1044 bp Zoom in on locus 1 x7 CRISPR array Location: 618-1044 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 618-1044 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 618-1044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLJ01000661.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.662, whole genome shotgun sequence

⇒Summary: seq-len = 26079 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19471-25968 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 19471-21879 bp Gene: cd09693:cas5 Type: Type-I Location: 21906-22712 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22728-23741 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 23760-25226 bp Gene: pfam01881:cas6 Type: other Location: 25231-25968 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLJ01000671.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.672, whole genome shotgun sequence

⇒Summary: seq-len = 11226 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 294-1250 bp Zoom in on locus 1 x15 CRISPR array Location: 294-1250 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 294-1250 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 294-1250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLJ01000533.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.534, whole genome shotgun sequence

⇒Summary: seq-len = 3019 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1933-2820 bp Zoom in on locus 1 x14 CRISPR array Location: 1933-2820 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1933-2820 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1933-2820 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLJ01000509.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.510, whole genome shotgun sequence

⇒Summary: seq-len = 2436 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1752-2312 bp Zoom in on locus 1 x9 CRISPR array Location: 1752-2312 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1752-2312 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1752-2312 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVLJ01000642.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.643, whole genome shotgun sequence

⇒Summary: seq-len = 5619 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4635-5455 bp Zoom in on locus 1 x13 CRISPR array Location: 4635-5455 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 4635-5455 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4635-5455 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVLJ01000495.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.496, whole genome shotgun sequence

⇒Summary: seq-len = 14435 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7357-8570 bp Zoom in on locus 1 x19 CRISPR array Location: 7357-8570 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 7357-8570 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7357-8570 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVLJ01000720.1 UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.721, whole genome shotgun sequence

⇒Summary: seq-len = 5240 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1806-5237 bp Zoom in on locus 1 x28 CRISPR array Location: 1806-3610 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 1806-3610 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09725:cas2 Type: universal Location: 3794-4060 bp Gene: cd09722:cas1 Type: universal Location: 4063-5043 bp Gene: pfam01930:cas4 Type: Type-I Location: 5046-5237 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1806-3610 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)