CRISPRone

CRISPRone report for GCA_000531655.1_E7

♦ Seq 1: HF929676.1 Clostridium difficile E7 genomic scaffold, 1839_385, whole genome shotgun sequence

⇒Summary: seq-len = 1897 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-157 bp Zoom in on locus 1 x3 CRISPR array Location: 1-157 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1-157 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF929389.1 Clostridium difficile E7 genomic scaffold, 1839_98, whole genome shotgun sequence

⇒Summary: seq-len = 22035 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18565-18808 bp Zoom in on locus 1 x4 CRISPR array Location: 18565-18808 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18565-18808 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18565-18808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF929698.1 Clostridium difficile E7 genomic scaffold, 1839_407, whole genome shotgun sequence

⇒Summary: seq-len = 1049 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 699-1053 bp Zoom in on locus 1 x6 CRISPR array Location: 699-1053 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 699-1053 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 699-1053 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF929530.1 Clostridium difficile E7 genomic scaffold, 1839_239, whole genome shotgun sequence

⇒Summary: seq-len = 24343 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17770-24271 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17770-20178 bp Gene: cd09693:cas5 Type: Type-I Location: 20205-21002 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21018-22034 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22054-23529 bp Gene: pfam01881:cas6 Type: other Location: 23534-24271 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF929577.1 Clostridium difficile E7 genomic scaffold, 1839_286, whole genome shotgun sequence

⇒Summary: seq-len = 33018 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102-9483 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 102-368 bp Gene: cd09722:cas1 Type: universal Location: 371-1351 bp Gene: pfam01930:cas4 Type: Type-I Location: 1354-1872 bp Gene: COG1203:cas3 Type: Type-I Location: 1920-4241 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4252-4953 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 4955-5869 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5871-7748 bp Gene: pfam01881:cas6 Type: other Location: 7754-8548 bp Gene: pfam13280:WYL Type: other Location: 8569-9483 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)