CRISPRone

CRISPRone report for GCA_000699685.1_ASM69968v1

♦ Seq 1: JNHH01000019.1 Bacteroides fragilis str. 3725 D9 ii gbf3725D9ii.contig.18, whole genome shotgun sequence

⇒Summary: seq-len = 93006 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38150-42400 bp Zoom in on locus 1 Gene: cls001593:casR Type: Type-I Location: 38150-38590 bp Gene: unk Type: unknown Location: 38844-39443 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 39444-39740 bp Gene: unk Type: unknown Location: 39767-41119 bp Gene: unk Type: unknown Location: 41577-42020 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 42050-42400 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JNHH01000070.1 Bacteroides fragilis str. 3725 D9 ii gbf3725D9ii.contig.71, whole genome shotgun sequence

⇒Summary: seq-len = 69924 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39529-39983 bp Zoom in on locus 1 x7 CRISPR array Location: 39529-39983 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 39529-39983 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39529-39983 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JNHH01000031.1 Bacteroides fragilis str. 3725 D9 ii gbf3725D9ii.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 37072 bp; # of CRISPR array = 1; # of cas gene = 4  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18697-33594 bp Zoom in on locus 1 x34 Gene: pfam13280:WYL Type: other Location: 18697-19596 bp CRISPR array Location: 24002-26573 bp Num of repeats: 34 Spacers: s1-s33 CRISPR array Location: 24002-26573 bp Num of repeats: 34 Spacers: s1-s33 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 26682-26987 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 27014-27946 bp Gene: unk Type: unknown Location: 27939-28886 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 28949-33481 bp antiRepeat Location: 33549-33594 bp Strand: - Match length: 29 bp Mismatch: 18 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 24002-26573 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JNHH01000022.1 Bacteroides fragilis str. 3725 D9 ii gbf3725D9ii.contig.21, whole genome shotgun sequence

⇒Summary: seq-len = 259355 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 234003-234287 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 234003-234287 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)