CRISPRone

CRISPRone report for GCA_003324075.1_ASM332407v1

♦ Seq 1: QOVR01001073.1 Clostridioides difficile strain 15 Scaffold1061_1, whole genome shotgun sequence

⇒Summary: seq-len = 956 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256-942 bp Zoom in on locus 1 x11 CRISPR array Location: 256-942 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 256-942 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 256-942 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QOVR01000498.1 Clostridioides difficile strain 15 Scaffold491_1, whole genome shotgun sequence

⇒Summary: seq-len = 2759 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2116-2345 bp Zoom in on locus 1 x4 CRISPR array Location: 2116-2345 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2116-2345 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2116-2345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QOVR01000719.1 Clostridioides difficile strain 15 Scaffold708_1, whole genome shotgun sequence

⇒Summary: seq-len = 1835 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 467-710 bp Zoom in on locus 1 x4 CRISPR array Location: 467-710 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 467-710 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 467-710 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QOVR01000025.1 Clostridioides difficile strain 15 Scaffold23_1, whole genome shotgun sequence

⇒Summary: seq-len = 12739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10164-10588 bp Zoom in on locus 1 x7 CRISPR array Location: 10164-10588 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 10164-10588 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10164-10588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QOVR01000574.1 Clostridioides difficile strain 15 Scaffold565_1, whole genome shotgun sequence

⇒Summary: seq-len = 2360 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74-434 bp Zoom in on locus 1 x6 CRISPR array Location: 74-434 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 74-434 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74-434 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QOVR01000031.1 Clostridioides difficile strain 15 Scaffold29_1, whole genome shotgun sequence

⇒Summary: seq-len = 11569 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5408-11567 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 5408-7816 bp Gene: cd09693:cas5 Type: Type-I Location: 7843-8640 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 8656-9669 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 9689-11155 bp Gene: pfam01881:cas6 Type: other Location: 11160-11567 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)