CRISPRone

CRISPRone report for GCA_003439505.1_ASM343950v1

♦ Seq 1: QSVT01000001.1 Bacteroides fragilis strain OM02-11 OM02-11.Scaf1, whole genome shotgun sequence

⇒Summary: seq-len = 1018640 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138436-153725 bp Zoom in on locus 1 x24 CRISPR array Location: 138436-140097 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 138436-140097 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 140545-140835 bp Gene: cd09634:cas1 Type: universal Location: 140829-143099 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 143119-144063 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 144066-144476 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 144489-145328 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 145348-146487 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 146480-148282 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 148287-149696 bp Gene: unk Type: unknown Location: 149710-150189 bp Gene: cash17:cash17 Type: Type- Location: 150186-151613 bp Gene: unk Type: unknown Location: 151658-152437 bp Gene: unk Type: unknown Location: 152413-153039 bp Gene: cls000004:cas6 Type: other Location: 153057-153725 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 138436-140097 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QSVT01000033.1 Bacteroides fragilis strain OM02-11 OM02-11.Scaf33, whole genome shotgun sequence

⇒Summary: seq-len = 4446 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2773-2954 bp Zoom in on locus 1 x4 CRISPR array Location: 2773-2954 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2773-2954 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2773-2954 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QSVT01000002.1 Bacteroides fragilis strain OM02-11 OM02-11.Scaf2, whole genome shotgun sequence

⇒Summary: seq-len = 541906 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 418641-422254 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 418641-419540 bp Gene: unk Type: unknown Location: 419537-420802 bp Gene: unk Type: unknown Location: 420810-421583 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 421586-422254 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)