CRISPRone

CRISPRone report for GCA_003471925.1_ASM347192v1

♦ Seq 1: QRKL01000001.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf1, whole genome shotgun sequence

⇒Summary: seq-len = 795779 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 333-514 bp Zoom in on locus 1 x3 CRISPR array Location: 333-514 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 333-514 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 333-514 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QRKL01000003.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf3, whole genome shotgun sequence

⇒Summary: seq-len = 461876 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 864-8438 bp Zoom in on locus 1 x10 CRISPR array Location: 864-1602 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 864-1602 bp Num of repeats: 10 Spacers: s1-s9 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1712-2044 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2048-2980 bp Gene: unk Type: unknown Location: 3100-3408 bp Gene: unk Type: unknown Location: 3475-3999 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4015-8325 bp antiRepeat Location: 8393-8438 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 864-1602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QRKL01000022.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf22, whole genome shotgun sequence

⇒Summary: seq-len = 48715 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22549-31597 bp Zoom in on locus 1 x19 CRISPR array Location: 22549-23736 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 22549-23736 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09725:cas2 Type: universal Location: 23949-24212 bp Gene: cd09722:cas1 Type: universal Location: 24215-25228 bp Gene: pfam01930:cas4 Type: Type-I Location: 25225-25737 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 25802-26860 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 26873-28198 bp Gene: COG1203:cas3 Type: Type-I Location: 28202-30361 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 30351-30914 bp Gene: cd09652:cas6 Type: other Location: 30926-31597 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22549-23736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QRKL01000002.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf2, whole genome shotgun sequence

⇒Summary: seq-len = 539351 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 412975-416588 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 412975-413874 bp Gene: unk Type: unknown Location: 413871-415136 bp Gene: unk Type: unknown Location: 415144-415917 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 415920-416588 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)