CRISPRone

CRISPRone report for GCA_900002425.1_CD105HS6

♦ Seq 1: CCRP01000104.1 Peptoclostridium difficile genome assembly, contig: NODE_2205_length_72313_cov_15.373377, whole genome shotgun sequence

⇒Summary: seq-len = 72337 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CCRP01000219.1 Peptoclostridium difficile genome assembly, contig: NODE_678_length_53482_cov_16.495550, whole genome shotgun sequence

⇒Summary: seq-len = 53506 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 52504-53184 bp]: array | spacers
           [Locus range 53157-53513 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CCRP01000008.1 Peptoclostridium difficile genome assembly, contig: NODE_1050_length_3904_cov_16.935194, whole genome shotgun sequence

⇒Summary: seq-len = 3928 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3374-3933 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CCRP01000085.1 Peptoclostridium difficile genome assembly, contig: NODE_1911_length_28411_cov_14.524304, whole genome shotgun sequence

⇒Summary: seq-len = 28435 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 17657-18338 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CCRP01000168.1 Peptoclostridium difficile genome assembly, contig: NODE_415_length_65075_cov_15.481813, whole genome shotgun sequence

⇒Summary: seq-len = 65099 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 1-629 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CCRP01000079.1 Peptoclostridium difficile genome assembly, contig: NODE_1803_length_130270_cov_15.325678, whole genome shotgun sequence

⇒Summary: seq-len = 130294 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 123879-124037 bp]: array | spacers
           [Locus range 123886-124445 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CCRP01000194.1 Peptoclostridium difficile genome assembly, contig: NODE_571_length_600_cov_13.843333, whole genome shotgun sequence

⇒Summary: seq-len = 624 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 338-623 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CCRP01000042.1 Peptoclostridium difficile genome assembly, contig: NODE_137_length_49113_cov_15.570154, whole genome shotgun sequence

⇒Summary: seq-len = 49137 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 26518-26751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CCRP01000014.1 Peptoclostridium difficile genome assembly, contig: NODE_1097_length_44149_cov_15.774423, whole genome shotgun sequence

⇒Summary: seq-len = 44173 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 151-370 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CCRP01000076.1 Peptoclostridium difficile genome assembly, contig: NODE_1784_length_10728_cov_12.765100, whole genome shotgun sequence

⇒Summary: seq-len = 10752 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3391-4329 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: CCRP01000234.1 Peptoclostridium difficile genome assembly, contig: NODE_815_length_2295_cov_13.559477, whole genome shotgun sequence

⇒Summary: seq-len = 2319 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 1444-1664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: CCRP01000160.1 Peptoclostridium difficile genome assembly, contig: NODE_380_length_2700_cov_15.415185, whole genome shotgun sequence

⇒Summary: seq-len = 2724 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 837-1384 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: CCRP01000205.1 Peptoclostridium difficile genome assembly, contig: NODE_614_length_3780_cov_13.226984, whole genome shotgun sequence

⇒Summary: seq-len = 3804 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 811-1230 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)