CRISPRone

CRISPRone report for GCA_900002445.1_CD105HS4

♦ Seq 1: CCRQ01000125.1 Peptoclostridium difficile genome assembly, contig: NODE_57_length_97312_cov_10.799582, whole genome shotgun sequence

⇒Summary: seq-len = 97336 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 30127-30370 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CCRQ01000133.1 Peptoclostridium difficile genome assembly, contig: NODE_626_length_86162_cov_10.345987, whole genome shotgun sequence

⇒Summary: seq-len = 86186 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 0-220 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CCRQ01000014.1 Peptoclostridium difficile genome assembly, contig: NODE_1234_length_28466_cov_10.301202, whole genome shotgun sequence

⇒Summary: seq-len = 28490 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 17644-18395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CCRQ01000147.1 Peptoclostridium difficile genome assembly, contig: NODE_693_length_7983_cov_9.668421, whole genome shotgun sequence

⇒Summary: seq-len = 8007 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 4567-5247 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CCRQ01000142.1 Peptoclostridium difficile genome assembly, contig: NODE_651_length_236036_cov_10.291261, whole genome shotgun sequence

⇒Summary: seq-len = 236060 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CCRQ01000062.1 Peptoclostridium difficile genome assembly, contig: NODE_265_length_89987_cov_10.409670, whole genome shotgun sequence

⇒Summary: seq-len = 90011 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 76102-76328 bp]: array | spacers
           [Locus range 80363-80591 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CCRQ01000011.1 Peptoclostridium difficile genome assembly, contig: NODE_1214_length_409_cov_8.836185, whole genome shotgun sequence

⇒Summary: seq-len = 433 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 61-432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CCRQ01000007.1 Peptoclostridium difficile genome assembly, contig: NODE_1171_length_27554_cov_10.191007, whole genome shotgun sequence

⇒Summary: seq-len = 27578 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 7534-8017 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CCRQ01000110.1 Peptoclostridium difficile genome assembly, contig: NODE_475_length_2140_cov_9.011215, whole genome shotgun sequence

⇒Summary: seq-len = 2164 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 1269-2106 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CCRQ01000128.1 Peptoclostridium difficile genome assembly, contig: NODE_599_length_70177_cov_10.214828, whole genome shotgun sequence

⇒Summary: seq-len = 70201 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 546-705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: CCRQ01000035.1 Peptoclostridium difficile genome assembly, contig: NODE_1664_length_45109_cov_10.080649, whole genome shotgun sequence

⇒Summary: seq-len = 45133 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 0-1127 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: CCRQ01000180.1 Peptoclostridium difficile genome assembly, contig: NODE_983_length_303981_cov_11.251331, whole genome shotgun sequence

⇒Summary: seq-len = 304005 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 86294-87239 bp]: array | spacers
           [Locus range 87217-88090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)