CRISPRone

CRISPRone report for GCA_900002465.1_CD105HS27

♦ Seq 1: CCRZ01000006.1 Peptoclostridium difficile genome assembly, contig: NODE_1023_length_8898_cov_8.909418, whole genome shotgun sequence

⇒Summary: seq-len = 8924 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2922 bp Zoom in on locus 1 Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 2-826 bp Gene: pfam01881:cas6 Type: other Location: 1177-1488 bp Gene: pfam13280:WYL Type: other Location: 1969-2922 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CCRZ01000137.1 Peptoclostridium difficile genome assembly, contig: NODE_1426_length_12820_cov_11.308269, whole genome shotgun sequence

⇒Summary: seq-len = 12846 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9418-12756 bp Zoom in on locus 1 x32 CRISPR array Location: 9418-11476 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 9418-11476 bp Num of repeats: 32 Spacers: s1-s31 Gene: cd09725:cas2 Type: universal Location: 11660-11926 bp Gene: cd09722:cas1 Type: universal Location: 11929-12756 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9418-11476 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CCRZ01000317.1 Peptoclostridium difficile genome assembly, contig: NODE_1831_length_72741_cov_11.185892, whole genome shotgun sequence

⇒Summary: seq-len = 72767 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48578-49089 bp Zoom in on locus 1 x8 CRISPR array Location: 48578-49089 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 48578-49089 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 48578-49089 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CCRZ01000004.1 Peptoclostridium difficile genome assembly, contig: NODE_1019_length_846_cov_6.669031, whole genome shotgun sequence

⇒Summary: seq-len = 872 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-815 bp Zoom in on locus 1 x13 CRISPR array Location: 0-815 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 0-815 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-815 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CCRZ01000112.1 Peptoclostridium difficile genome assembly, contig: NODE_1366_length_586_cov_5.453925, whole genome shotgun sequence

⇒Summary: seq-len = 612 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-612 bp Zoom in on locus 1 x10 CRISPR array Location: 0-612 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 0-612 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-612 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CCRZ01000261.1 Peptoclostridium difficile genome assembly, contig: NODE_1704_length_2041_cov_3.749633, whole genome shotgun sequence

⇒Summary: seq-len = 2067 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 444-740 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 444-740 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CCRZ01000241.1 Peptoclostridium difficile genome assembly, contig: NODE_1661_length_5757_cov_5.675699, whole genome shotgun sequence

⇒Summary: seq-len = 5783 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93-1116 bp Zoom in on locus 1 x16 CRISPR array Location: 93-1116 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 93-1116 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93-1116 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CCRZ01000308.1 Peptoclostridium difficile genome assembly, contig: NODE_1815_length_3300_cov_7.542121, whole genome shotgun sequence

⇒Summary: seq-len = 3326 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 424-3266 bp Zoom in on locus 1 x42 CRISPR array Location: 424-3266 bp Num of repeats: 42 Spacers: s1-s41 CRISPR array Location: 424-3266 bp Num of repeats: 42 Spacers: s1-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 424-3266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CCRZ01000462.1 Peptoclostridium difficile genome assembly, contig: NODE_732_length_1456_cov_6.125000, whole genome shotgun sequence

⇒Summary: seq-len = 1482 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1480 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 3-923 bp Gene: cd09652:cas6 Type: other Location: 935-1480 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CCRZ01000311.1 Peptoclostridium difficile genome assembly, contig: NODE_1822_length_2931_cov_8.830774, whole genome shotgun sequence

⇒Summary: seq-len = 2957 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1483-2561 bp Zoom in on locus 1 x17 CRISPR array Location: 1483-2561 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 1483-2561 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1483-2561 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: CCRZ01000427.1 Peptoclostridium difficile genome assembly, contig: NODE_56_length_29655_cov_15.290643, whole genome shotgun sequence

⇒Summary: seq-len = 29681 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9905-10148 bp Zoom in on locus 1 x4 CRISPR array Location: 9905-10148 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 9905-10148 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9905-10148 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)