CRISPRone

CRISPRone report for GCA_900002545.1_CD105HS7

♦ Seq 1: CCRW01000012.1 Peptoclostridium difficile genome assembly, contig: NODE_1063_length_257_cov_7.739300, whole genome shotgun sequence

⇒Summary: seq-len = 281 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-280 bp Zoom in on locus 1 x5 CRISPR array Location: 0-280 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-280 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-280 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CCRW01000028.1 Peptoclostridium difficile genome assembly, contig: NODE_1128_length_255_cov_6.568627, whole genome shotgun sequence

⇒Summary: seq-len = 279 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-287 bp Zoom in on locus 1 x5 CRISPR array Location: 0-287 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-287 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-287 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CCRW01000070.1 Peptoclostridium difficile genome assembly, contig: NODE_1331_length_84366_cov_11.529538, whole genome shotgun sequence

⇒Summary: seq-len = 84390 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60743-68618 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 60743-62791 bp Gene: cd09693:cas5 Type: Type-I Location: 63171-63968 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 63984-64997 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 65017-66060 bp Gene: pfam01881:cas6 Type: other Location: 66514-67251 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 67509-68618 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CCRW01000039.1 Peptoclostridium difficile genome assembly, contig: NODE_1197_length_3223_cov_7.720447, whole genome shotgun sequence

⇒Summary: seq-len = 3247 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 689-915 bp Zoom in on locus 1 x4 CRISPR array Location: 689-915 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 689-915 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 689-915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CCRW01000163.1 Peptoclostridium difficile genome assembly, contig: NODE_1847_length_194_cov_5.396907, whole genome shotgun sequence

⇒Summary: seq-len = 218 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-217 bp Zoom in on locus 1 x4 CRISPR array Location: 0-217 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-217 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CCRW01000282.1 Peptoclostridium difficile genome assembly, contig: NODE_483_length_454_cov_10.414097, whole genome shotgun sequence

⇒Summary: seq-len = 478 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-479 bp Zoom in on locus 1 x8 CRISPR array Location: 0-479 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 0-479 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-479 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CCRW01000001.1 Peptoclostridium difficile genome assembly, contig: NODE_1004_length_32425_cov_10.346399, whole genome shotgun sequence

⇒Summary: seq-len = 32449 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28358-28718 bp Zoom in on locus 1 x6 CRISPR array Location: 28358-28718 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 28358-28718 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28358-28718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CCRW01000101.1 Peptoclostridium difficile genome assembly, contig: NODE_1495_length_704_cov_8.376420, whole genome shotgun sequence

⇒Summary: seq-len = 728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-661 bp Zoom in on locus 1 x11 CRISPR array Location: 0-661 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 0-661 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CCRW01000107.1 Peptoclostridium difficile genome assembly, contig: NODE_1526_length_29534_cov_10.208641, whole genome shotgun sequence

⇒Summary: seq-len = 29558 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2438-2855 bp Zoom in on locus 1 x7 CRISPR array Location: 2438-2855 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2438-2855 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2438-2855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CCRW01000353.1 Peptoclostridium difficile genome assembly, contig: NODE_695_length_3476_cov_7.943901, whole genome shotgun sequence

⇒Summary: seq-len = 3500 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3498 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 3-347 bp Gene: pfam05107:cas7b Type: Type-I Location: 340-1329 bp Gene: cd09693:cas5 Type: Type-I Location: 1331-2071 bp Gene: cd09639:cas3 Type: Type-I Location: 2995-3498 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: CCRW01000245.1 Peptoclostridium difficile genome assembly, contig: NODE_339_length_187_cov_7.716578, whole genome shotgun sequence

⇒Summary: seq-len = 211 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-220 bp Zoom in on locus 1 x4 CRISPR array Location: 0-220 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-220 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-220 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: CCRW01000033.1 Peptoclostridium difficile genome assembly, contig: NODE_1163_length_2511_cov_8.425727, whole genome shotgun sequence

⇒Summary: seq-len = 2535 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 373-533 bp Zoom in on locus 1 x3 CRISPR array Location: 373-533 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 373-533 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 373-533 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: CCRW01000267.1 Peptoclostridium difficile genome assembly, contig: NODE_414_length_13196_cov_10.348893, whole genome shotgun sequence

⇒Summary: seq-len = 13220 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2891-3119 bp Zoom in on locus 1 x4 CRISPR array Location: 2891-3119 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2891-3119 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2891-3119 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: CCRW01000067.1 Peptoclostridium difficile genome assembly, contig: NODE_1327_length_2417_cov_7.399255, whole genome shotgun sequence

⇒Summary: seq-len = 2441 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2420 bp Zoom in on locus 1 x13 CRISPR array Location: 0-800 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 0-800 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam01930:cas4 Type: Type-I Location: 893-1387 bp Gene: cd09722:cas1 Type: universal Location: 1413-2420 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 15: CCRW01000114.1 Peptoclostridium difficile genome assembly, contig: NODE_1546_length_276_cov_9.079710, whole genome shotgun sequence

⇒Summary: seq-len = 300 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-222 bp Zoom in on locus 1 x4 CRISPR array Location: 0-222 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-222 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-222 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 16: CCRW01000118.1 Peptoclostridium difficile genome assembly, contig: NODE_1569_length_1771_cov_7.480519, whole genome shotgun sequence

⇒Summary: seq-len = 1795 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-602 bp Zoom in on locus 1 x10 CRISPR array Location: 0-602 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 0-602 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 17: CCRW01000329.1 Peptoclostridium difficile genome assembly, contig: NODE_621_length_1102_cov_7.662432, whole genome shotgun sequence

⇒Summary: seq-len = 1126 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1125 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2-544 bp Gene: cd09652:cas6 Type: other Location: 556-1125 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)