CRISPRone

CRISPRone report for GCA_000009205.2_ASM920v2

♦ Seq 1: AM180355.1 Clostridium difficile 630 complete genome

⇒Summary: seq-len = 4290252 bp; # of CRISPR array = 13; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1125024-1125755 bp 2 Locus 2: 1434756-1435640 bp 3 Locus 3: 1645194-1645953 bp 4 Locus 4: 1756278-1756834 bp 5 Locus 5: 1935482-1936496 bp 6 Locus 6: 2298609-2298769 bp 7 Locus 7: 2662981-2663867 bp 8 Locus 8: 2825848-2834194 bp 9 Locus 9: 2907464-2907889 bp 10 Locus 10: 3396887-3397617 bp 11 Locus 11: 3455612-3466323 bp 12 Locus 12: 3680925-3681018 bp Zoom in on locus 1 x7 x3 Zoom in on locus 2 x14 Zoom in on locus 3 x12 Zoom in on locus 4 x9 Zoom in on locus 5 x16 Zoom in on locus 6 x3 Zoom in on locus 7 x14 Zoom in on locus 8 Zoom in on locus 9 x7 Zoom in on locus 10 x3 x7 Zoom in on locus 11 x18 Zoom in on locus 12 x2 CRISPR array Location: 1125024-1125450 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1125024-1125450 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1125594-1125755 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 1125594-1125755 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 1434756-1435640 bp Num of repeats: 14 Spacers: s9-s21 CRISPR array Location: 1434756-1435640 bp Num of repeats: 14 Spacers: s9-s21 CRISPR array Location: 1645194-1645953 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 1645194-1645953 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 1756278-1756834 bp Num of repeats: 9 Spacers: s33-s40 CRISPR array Location: 1756278-1756834 bp Num of repeats: 9 Spacers: s33-s40 CRISPR array Location: 1935482-1936496 bp Num of repeats: 16 Spacers: s41-s55 CRISPR array Location: 1935482-1936496 bp Num of repeats: 16 Spacers: s41-s55 CRISPR array Location: 2298609-2298769 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 2298609-2298769 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 2662981-2663867 bp Num of repeats: 14 Spacers: s58-s70 CRISPR array Location: 2662981-2663867 bp Num of repeats: 14 Spacers: s58-s70 Gene: cd09641:cas3HD Type: Type-I Location: 2825848-2828256 bp Gene: cd09693:cas5 Type: Type-I Location: 2828283-2829080 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2829096-2830112 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2830132-2831607 bp Gene: pfam01881:cas6 Type: other Location: 2831612-2832349 bp Gene: unk Type: unknown Location: 2832450-2832626 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2833085-2834194 bp CRISPR array Location: 2907464-2907889 bp Num of repeats: 7 Spacers: s71-s76 CRISPR array Location: 2907464-2907889 bp Num of repeats: 7 Spacers: s71-s76 CRISPR array Location: 3396887-3397047 bp Num of repeats: 3 Spacers: s77-s78 CRISPR array Location: 3396887-3397047 bp Num of repeats: 3 Spacers: s77-s78 CRISPR array Location: 3397192-3397617 bp Num of repeats: 7 Spacers: s79-s84 CRISPR array Location: 3397192-3397617 bp Num of repeats: 7 Spacers: s79-s84 CRISPR array Location: 3455612-3456758 bp Num of repeats: 18 Spacers: s85-s101 CRISPR array Location: 3455612-3456758 bp Num of repeats: 18 Spacers: s85-s101 Gene: cd09725:cas2 Type: universal Location: 3456942-3457208 bp Gene: cd09722:cas1 Type: universal Location: 3457211-3458191 bp Gene: pfam01930:cas4 Type: Type-I Location: 3458194-3458712 bp Gene: COG1203:cas3 Type: Type-I Location: 3458760-3461081 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3461092-3461793 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3461795-3462709 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3462711-3464588 bp Gene: pfam01881:cas6 Type: other Location: 3464594-3465388 bp Gene: pfam13280:WYL Type: other Location: 3465409-3466323 bp CRISPR array Location: 3680925-3681018 bp Num of repeats: 2 Spacers: s102-s102 CRISPR array Location: 3680925-3681018 bp Num of repeats: 2 Spacers: s102-s102 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1125024-1125450 bp]: array | spacers
           [Locus range 1125594-1125755 bp]: array | spacers
           [Locus range 1434756-1435640 bp]: array | spacers
           [Locus range 1645194-1645953 bp]: array | spacers
           [Locus range 1756278-1756834 bp]: array | spacers
           [Locus range 1935482-1936496 bp]: array | spacers
           [Locus range 2298609-2298769 bp]: array | spacers
           [Locus range 2662981-2663867 bp]: array | spacers
           [Locus range 2907464-2907889 bp]: array | spacers
           [Locus range 3396887-3397047 bp]: array | spacers
           [Locus range 3397192-3397617 bp]: array | spacers
           [Locus range 3455612-3456758 bp]: array | spacers
           [Locus range 3680925-3681018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)