CRISPRone

CRISPRone report for GCA_000085225.1_ASM8522v1

♦ Seq 1: FN538970.1 Clostridium difficile CD196 complete genome, strain CD196

⇒Summary: seq-len = 4110554 bp; # of CRISPR array = 10; # of cas gene = 25  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1294727-1295681 bp 2 Locus 2: 1504069-1504756 bp 3 Locus 3: 1580702-1584714 bp 4 Locus 4: 1615439-1615733 bp 5 Locus 5: 1709876-1712387 bp 6 Locus 6: 1849663-1850748 bp 7 Locus 7: 2158530-2158624 bp 8 Locus 8: 2200244-2200869 bp 9 Locus 9: 2661117-2668992 bp 10 Locus 10: 3244625-3255607 bp 11 Locus 11: 3491430-3497962 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x17 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x22 Zoom in on locus 11 x10 CRISPR array Location: 1294727-1295681 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1294727-1295681 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1504069-1504756 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1504069-1504756 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1580702-1581301 bp Gene: unk Type: unknown Location: 1581469-1581936 bp Gene: COG2378:WYL Type: other Location: 1582041-1582958 bp Gene: cas14:cas14 Type: Type-V Location: 1583597-1584142 bp Gene: cas14:cas14 Type: Type-V Location: 1584421-1584714 bp CRISPR array Location: 1615439-1615733 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1615439-1615733 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1709876-1710233 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1709876-1710233 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1712097-1712387 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1712097-1712387 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1849663-1850748 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 1849663-1850748 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 2158530-2158624 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2158530-2158624 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2200244-2200869 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2200244-2200869 bp Num of repeats: 10 Spacers: s55-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2661117-2663525 bp Gene: cd09693:cas5 Type: Type-I Location: 2663552-2664358 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2664374-2665387 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2665407-2666882 bp Gene: pfam01881:cas6 Type: other Location: 2666887-2667624 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2667883-2668992 bp CRISPR array Location: 3244625-3246042 bp Num of repeats: 22 Spacers: s64-s84 CRISPR array Location: 3244625-3246042 bp Num of repeats: 22 Spacers: s64-s84 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3245471-3245704 bp Gene: cd09725:cas2 Type: universal Location: 3246226-3246492 bp Gene: cd09722:cas1 Type: universal Location: 3246495-3247475 bp Gene: pfam01930:cas4 Type: Type-I Location: 3247478-3247996 bp Gene: COG1203:cas3 Type: Type-I Location: 3248044-3250365 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3250376-3251077 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3251079-3251993 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3251995-3253872 bp Gene: pfam01881:cas6 Type: other Location: 3253878-3254672 bp Gene: pfam13280:WYL Type: other Location: 3254693-3255607 bp CRISPR array Location: 3491430-3492052 bp Num of repeats: 10 Spacers: s85-s93 CRISPR array Location: 3491430-3492052 bp Num of repeats: 10 Spacers: s85-s93 Gene: COG1203:cas3 Type: Type-I Location: 3492305-3494290 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3494301-3495371 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3495392-3496558 bp Gene: pfam01881:cas6 Type: other Location: 3496560-3497324 bp Gene: cd09693:cas5 Type: Type-I Location: 3497315-3497962 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1294727-1295681 bp]: array | spacers
           [Locus range 1504069-1504756 bp]: array | spacers
           [Locus range 1615439-1615733 bp]: array | spacers
           [Locus range 1709876-1710233 bp]: array | spacers
           [Locus range 1712097-1712387 bp]: array | spacers
           [Locus range 1849663-1850748 bp]: array | spacers
           [Locus range 2158530-2158624 bp]: array | spacers
           [Locus range 2200244-2200869 bp]: array | spacers
           [Locus range 3244625-3246042 bp]: array | spacers
           [Locus range 3491430-3492052 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)