CRISPRone

CRISPRone report for GCA_000152545.1_ASM15254v1

♦ Seq 1: CH482384.1 Pseudomonas aeruginosa 2192 supercont1.1 genomic scaffold, whole genome shotgun sequence

⇒Summary: seq-len = 6905121 bp; # of CRISPR array = 5; # of cas gene = 15  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239007-249477 bp 2 Locus 2: 1707681-1717735 bp Zoom in on locus 1 x12 x12 x4 Zoom in on locus 2 x9 x16 CRISPR array Location: 239007-239707 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 239007-239707 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 240479-243160 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 243163-244731 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 244728-245270 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 245267-246409 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 246411-247073 bp Gene: pfam08798:cas6e Type: other Location: 247048-247659 bp Gene: cd09719:cas1 Type: universal Location: 247686-247997 bp Gene: pfam09707:cas2 Type: universal Location: 247994-248293 bp CRISPR array Location: 248358-249058 bp Num of repeats: 12 Spacers: s12-s22 CRISPR array Location: 248358-249058 bp Num of repeats: 12 Spacers: s12-s22 CRISPR array Location: 249265-249477 bp Num of repeats: 4 Spacers: s23-s25 CRISPR array Location: 249265-249477 bp Num of repeats: 4 Spacers: s23-s25 CRISPR array Location: 1707681-1708190 bp Num of repeats: 9 Spacers: s26-s33 CRISPR array Location: 1707681-1708190 bp Num of repeats: 9 Spacers: s26-s33 Gene: cd09718:cas1 Type: universal Location: 1708450-1709424 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 1709421-1711586 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 1711529-1712686 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1712744-1714048 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1714035-1715018 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1715029-1716057 bp Gene: cd09739:cas6f Type: other Location: 1716061-1716624 bp CRISPR array Location: 1716808-1717735 bp Num of repeats: 16 Spacers: s34-s48 CRISPR array Location: 1716808-1717735 bp Num of repeats: 16 Spacers: s34-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239007-239707 bp]: array | spacers
           [Locus range 248358-249058 bp]: array | spacers
           [Locus range 249265-249477 bp]: array | spacers
           [Locus range 1707681-1708190 bp]: array | spacers
           [Locus range 1716808-1717735 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)