CRISPRone

CRISPRone report for GCA_000162135.1_ASM16213v1

♦ Seq 1: GG705209.1 Bacteroides sp. 2_1_16 genomic scaffold supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 2152962 bp; # of CRISPR array = 1; # of cas gene = 11  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1158235-1168562 bp 2 Locus 2: 1938173-1947222 bp Zoom in on locus 1 Zoom in on locus 2 x19 Gene: mkCas0090:PD-DExK Type: other Location: 1158235-1158594 bp Gene: unk Type: unknown Location: 1158816-1159955 bp Gene: COG2378:WYL Type: other Location: 1159952-1160122 bp Gene: cd06127:DEDDh Type: Type-I Location: 1167789-1168562 bp CRISPR array Location: 1938173-1939361 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1938173-1939361 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09725:cas2 Type: universal Location: 1939574-1939837 bp Gene: cd09722:cas1 Type: universal Location: 1939840-1940853 bp Gene: pfam01930:cas4 Type: Type-I Location: 1940850-1941407 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 1941427-1942485 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 1942498-1943823 bp Gene: COG1203:cas3 Type: Type-I Location: 1943827-1945986 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 1945976-1946539 bp Gene: cd09652:cas6 Type: other Location: 1946551-1947222 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1938173-1939361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: GG705212.1 Bacteroides sp. 2_1_16 genomic scaffold supercont1.4, whole genome shotgun sequence

⇒Summary: seq-len = 582500 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107605-111218 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 107605-108273 bp Gene: unk Type: unknown Location: 108276-109049 bp Gene: unk Type: unknown Location: 109057-110322 bp Gene: pfam13280:WYL Type: other Location: 110319-111218 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: GG705213.1 Bacteroides sp. 2_1_16 genomic scaffold supercont1.5, whole genome shotgun sequence

⇒Summary: seq-len = 414295 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 406276-413773 bp Zoom in on locus 1 x9 antiRepeat Location: 406276-406321 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 406389-410699 bp Gene: unk Type: unknown Location: 410715-411239 bp Gene: unk Type: unknown Location: 411306-411614 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 411734-412666 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 412670-413002 bp CRISPR array Location: 413111-413773 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 413111-413773 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 413111-413773 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)