CRISPRone

CRISPRone report for GCA_000164655.1_ASM16465v1

♦ Seq 1: GG770746.1 Clostridium difficile NAP07 genomic scaffold SCAFFOLD3, whole genome shotgun sequence

⇒Summary: seq-len = 444837 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 187081-198780 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 187081-188034 bp Gene: pfam01881:cas6 Type: other Location: 188112-188849 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 188855-190705 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 190707-191621 bp Gene: cd09693:cas5 Type: Type-I Location: 191623-192324 bp Gene: COG1203:cas3 Type: Type-I Location: 192335-194656 bp Gene: pfam01930:cas4 Type: Type-I Location: 194671-195222 bp Gene: cd09722:cas1 Type: universal Location: 195225-196205 bp Gene: cd09725:cas2 Type: universal Location: 196208-196474 bp CRISPR array Location: 196658-198780 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 196658-198780 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 196658-198780 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: GG770747.1 Clostridium difficile NAP07 genomic scaffold SCAFFOLD4, whole genome shotgun sequence

⇒Summary: seq-len = 592574 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275030-283817 bp 2 Locus 2: 336420-347373 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 275030-276139 bp Gene: unk Type: unknown Location: 276592-276768 bp Gene: pfam01881:cas6 Type: other Location: 277329-278066 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 278071-279537 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 279556-280569 bp Gene: cd09693:cas5 Type: Type-I Location: 280585-281382 bp Gene: cd09641:cas3HD Type: Type-I Location: 281409-283817 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 336420-336905 bp Gene: cd06127:DEDDh Type: Type-I Location: 343720-344757 bp Gene: unk Type: unknown Location: 345121-345627 bp Gene: unk Type: unknown Location: 346040-346708 bp Gene: cd06127:DEDDh Type: Type-I Location: 346867-347373 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: GG770749.1 Clostridium difficile NAP07 genomic scaffold SCAFFOLD6, whole genome shotgun sequence

⇒Summary: seq-len = 705359 bp; # of CRISPR array = 4; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142161-143310 bp 2 Locus 2: 467773-480083 bp 3 Locus 3: 517587-518400 bp 4 Locus 4: 626389-638042 bp Zoom in on locus 1 x18 Zoom in on locus 2 x44 Zoom in on locus 3 x13 Zoom in on locus 4 x40 CRISPR array Location: 142161-143310 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 142161-143310 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 467773-470637 bp Num of repeats: 44 Spacers: s18-s60 CRISPR array Location: 467773-470637 bp Num of repeats: 44 Spacers: s18-s60 Gene: cd09718:cas1 Type: universal Location: 478039-479694 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 479706-480083 bp CRISPR array Location: 517587-518400 bp Num of repeats: 13 Spacers: s61-s72 CRISPR array Location: 517587-518400 bp Num of repeats: 13 Spacers: s61-s72 Gene: cd09725:cas2 Type: universal Location: 626389-626679 bp Gene: cd09722:cas1 Type: universal Location: 626890-627897 bp Gene: pfam01930:cas4 Type: Type-I Location: 627923-628417 bp CRISPR array Location: 628502-631100 bp Num of repeats: 40 Spacers: s73-s111 CRISPR array Location: 628502-631100 bp Num of repeats: 40 Spacers: s73-s111 Gene: unk Type: unknown Location: 629125-629253 bp Gene: cd09641:cas3HD Type: Type-I Location: 631290-633848 bp Gene: cd09693:cas5 Type: Type-I Location: 633872-634612 bp Gene: pfam05107:cas7b Type: Type-I Location: 634614-635603 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 635596-637335 bp Gene: cd09652:cas6 Type: other Location: 637347-638042 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 142161-143310 bp]: array | spacers
           [Locus range 467773-470637 bp]: array | spacers
           [Locus range 517587-518400 bp]: array | spacers
           [Locus range 628502-631100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: GG770750.1 Clostridium difficile NAP07 genomic scaffold SCAFFOLD7, whole genome shotgun sequence

⇒Summary: seq-len = 525841 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 215714-222900 bp 2 Locus 2: 333383-334009 bp Zoom in on locus 1 Zoom in on locus 2 x10 Gene: cd09655:casR Type: Type-I Location: 215714-216055 bp Gene: unk Type: unknown Location: 216236-217366 bp Gene: unk Type: unknown Location: 217494-219392 bp Gene: cd06127:DEDDh Type: Type-I Location: 219707-220483 bp Gene: unk Type: unknown Location: 220575-221099 bp Gene: cd09655:casR Type: Type-I Location: 222448-222900 bp CRISPR array Location: 333383-334009 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 333383-334009 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 333383-334009 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)