CRISPRone

CRISPRone report for GCA_000210415.1_ASM21041v1

♦ Seq 1: FN665652.1 Clostridium difficile complete genome, strain CF5

⇒Summary: seq-len = 4159517 bp; # of CRISPR array = 9; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1327363-1327458 bp 2 Locus 2: 1540073-1540234 bp 3 Locus 3: 1649491-1650111 bp 4 Locus 4: 1741664-1745541 bp 5 Locus 5: 1887965-1889573 bp 6 Locus 6: 2653414-2664372 bp 7 Locus 7: 2715581-2725304 bp 8 Locus 8: 2805090-2805446 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 Zoom in on locus 3 x10 Zoom in on locus 4 x2 x6 x14 x2 Zoom in on locus 5 x25 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x6 CRISPR array Location: 1327363-1327458 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1327363-1327458 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1540073-1540234 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1540073-1540234 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1649491-1650111 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1649491-1650111 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1741664-1741757 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 1741664-1741757 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 1741818-1742176 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 1741818-1742176 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 1742778-1743665 bp Num of repeats: 14 Spacers: s19-s31 CRISPR array Location: 1742778-1743665 bp Num of repeats: 14 Spacers: s19-s31 CRISPR array Location: 1745446-1745541 bp Num of repeats: 2 Spacers: s32-s32 CRISPR array Location: 1745446-1745541 bp Num of repeats: 2 Spacers: s32-s32 CRISPR array Location: 1887965-1889573 bp Num of repeats: 25 Spacers: s33-s56 CRISPR array Location: 1887965-1889573 bp Num of repeats: 25 Spacers: s33-s56 Gene: cd06127:DEDDh Type: Type-I Location: 2653414-2653920 bp Gene: unk Type: unknown Location: 2654079-2654747 bp Gene: unk Type: unknown Location: 2655160-2655666 bp Gene: cd06127:DEDDh Type: Type-I Location: 2656038-2657075 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2663887-2664372 bp Gene: cd09641:cas3HD Type: Type-I Location: 2715581-2717989 bp Gene: cd09693:cas5 Type: Type-I Location: 2718016-2718813 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2718829-2719842 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2719862-2721328 bp Gene: pfam01881:cas6 Type: other Location: 2721333-2722070 bp Gene: unk Type: unknown Location: 2722384-2722842 bp Gene: cas14:cas14 Type: Type-V Location: 2722870-2724042 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2724195-2725304 bp CRISPR array Location: 2805090-2805446 bp Num of repeats: 6 Spacers: s57-s61 CRISPR array Location: 2805090-2805446 bp Num of repeats: 6 Spacers: s57-s61 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1327363-1327458 bp]: array | spacers
           [Locus range 1540073-1540234 bp]: array | spacers
           [Locus range 1649491-1650111 bp]: array | spacers
           [Locus range 1741664-1741757 bp]: array | spacers
           [Locus range 1741818-1742176 bp]: array | spacers
           [Locus range 1742778-1743665 bp]: array | spacers
           [Locus range 1745446-1745541 bp]: array | spacers
           [Locus range 1887965-1889573 bp]: array | spacers
           [Locus range 2805090-2805446 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)