CRISPRone

CRISPRone report for GCA_000210435.1_ASM21043v1

♦ Seq 1: FN665653.1 Clostridium difficile complete genome, strain M120

⇒Summary: seq-len = 4047729 bp; # of CRISPR array = 6; # of cas gene = 28  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1343256-1343883 bp 2 Locus 2: 1826292-1827441 bp 3 Locus 3: 2152962-2165274 bp 4 Locus 4: 2220686-2221499 bp 5 Locus 5: 2329487-2340813 bp 6 Locus 6: 2628721-2639673 bp 7 Locus 7: 2692276-2700603 bp 8 Locus 8: 3266657-3278355 bp Zoom in on locus 1 x10 Zoom in on locus 2 x18 Zoom in on locus 3 x44 Zoom in on locus 4 x13 Zoom in on locus 5 x39 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x33 CRISPR array Location: 1343256-1343883 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1343256-1343883 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1826292-1827441 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 1826292-1827441 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 2152962-2155826 bp Num of repeats: 44 Spacers: s27-s69 CRISPR array Location: 2152962-2155826 bp Num of repeats: 44 Spacers: s27-s69 Gene: cd09718:cas1 Type: universal Location: 2163230-2164885 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2164897-2165274 bp CRISPR array Location: 2220686-2221499 bp Num of repeats: 13 Spacers: s70-s81 CRISPR array Location: 2220686-2221499 bp Num of repeats: 13 Spacers: s70-s81 Gene: cd09725:cas2 Type: universal Location: 2329487-2329777 bp Gene: cd09722:cas1 Type: universal Location: 2329988-2330995 bp Gene: pfam01930:cas4 Type: Type-I Location: 2331021-2331515 bp CRISPR array Location: 2331600-2334132 bp Num of repeats: 39 Spacers: s82-s119 CRISPR array Location: 2331600-2334132 bp Num of repeats: 39 Spacers: s82-s119 Gene: unk Type: unknown Location: 2332223-2332351 bp Gene: cd09641:cas3HD Type: Type-I Location: 2334322-2336880 bp Gene: cd09693:cas5 Type: Type-I Location: 2336904-2337644 bp Gene: pfam05107:cas7b Type: Type-I Location: 2337646-2338635 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2338628-2340367 bp Gene: cd09652:cas6 Type: other Location: 2340379-2340813 bp Gene: cd06127:DEDDh Type: Type-I Location: 2628721-2629227 bp Gene: unk Type: unknown Location: 2629386-2630054 bp Gene: unk Type: unknown Location: 2630466-2630972 bp Gene: cd06127:DEDDh Type: Type-I Location: 2631336-2632373 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2639188-2639673 bp Gene: cd09641:cas3HD Type: Type-I Location: 2692276-2694684 bp Gene: cd09693:cas5 Type: Type-I Location: 2694711-2695508 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2695524-2696537 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2696556-2698022 bp Gene: pfam01881:cas6 Type: other Location: 2698027-2698764 bp Gene: unk Type: unknown Location: 2698865-2699041 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2699494-2700603 bp CRISPR array Location: 3266657-3268778 bp Num of repeats: 33 Spacers: s120-s151 CRISPR array Location: 3266657-3268778 bp Num of repeats: 33 Spacers: s120-s151 Gene: cd09725:cas2 Type: universal Location: 3268962-3269228 bp Gene: cd09722:cas1 Type: universal Location: 3269231-3270211 bp Gene: pfam01930:cas4 Type: Type-I Location: 3270214-3270732 bp Gene: COG1203:cas3 Type: Type-I Location: 3270780-3273101 bp Gene: cd09693:cas5 Type: Type-I Location: 3273112-3273813 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3273815-3274729 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3274731-3276581 bp Gene: pfam01881:cas6 Type: other Location: 3276587-3277324 bp Gene: pfam13280:WYL Type: other Location: 3277402-3278355 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1343256-1343883 bp]: array | spacers
           [Locus range 1826292-1827441 bp]: array | spacers
           [Locus range 2152962-2155826 bp]: array | spacers
           [Locus range 2220686-2221499 bp]: array | spacers
           [Locus range 2331600-2334132 bp]: array | spacers
           [Locus range 3266657-3268778 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)