CRISPRone

CRISPRone report for GCA_000210455.1_ASM21045v1

♦ Seq 1: FN665654.1 Clostridium difficile complete genome, strain 2007855

⇒Summary: seq-len = 4179867 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1288149-1289103 bp 2 Locus 2: 1497487-1498174 bp 3 Locus 3: 1574120-1578133 bp 4 Locus 4: 1608857-1609151 bp 5 Locus 5: 1701535-1704045 bp 6 Locus 6: 1841322-1842407 bp 7 Locus 7: 2150181-2150275 bp 8 Locus 8: 2191897-2192522 bp 9 Locus 9: 2652764-2660639 bp 10 Locus 10: 3264111-3275160 bp 11 Locus 11: 3510931-3517463 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x17 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x23 Zoom in on locus 11 x10 CRISPR array Location: 1288149-1289103 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1288149-1289103 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1497487-1498174 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1497487-1498174 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1574120-1574719 bp Gene: unk Type: unknown Location: 1574887-1575354 bp Gene: COG2378:WYL Type: other Location: 1575459-1576376 bp Gene: cas14:cas14 Type: Type-V Location: 1577015-1578133 bp CRISPR array Location: 1608857-1609151 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1608857-1609151 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1701535-1701892 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1701535-1701892 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1703755-1704045 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1703755-1704045 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1841322-1842407 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 1841322-1842407 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 2150181-2150275 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2150181-2150275 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2191897-2192522 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2191897-2192522 bp Num of repeats: 10 Spacers: s55-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2652764-2655172 bp Gene: cd09693:cas5 Type: Type-I Location: 2655199-2656005 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2656021-2657034 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2657054-2658529 bp Gene: pfam01881:cas6 Type: other Location: 2658534-2659271 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2659530-2660639 bp CRISPR array Location: 3264111-3265595 bp Num of repeats: 23 Spacers: s64-s85 CRISPR array Location: 3264111-3265595 bp Num of repeats: 23 Spacers: s64-s85 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3264957-3265190 bp Gene: unk Type: unknown Location: 3265412-3265579 bp Gene: cd09725:cas2 Type: universal Location: 3265779-3266045 bp Gene: cd09722:cas1 Type: universal Location: 3266048-3267028 bp Gene: pfam01930:cas4 Type: Type-I Location: 3267031-3267549 bp Gene: COG1203:cas3 Type: Type-I Location: 3267597-3269918 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3269929-3270630 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3270632-3271546 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3271548-3273425 bp Gene: pfam01881:cas6 Type: other Location: 3273431-3274225 bp Gene: pfam13280:WYL Type: other Location: 3274246-3275160 bp CRISPR array Location: 3510931-3511553 bp Num of repeats: 10 Spacers: s86-s94 CRISPR array Location: 3510931-3511553 bp Num of repeats: 10 Spacers: s86-s94 Gene: COG1203:cas3 Type: Type-I Location: 3511806-3513791 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3513802-3514872 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3514893-3516059 bp Gene: pfam01881:cas6 Type: other Location: 3516061-3516825 bp Gene: cd09693:cas5 Type: Type-I Location: 3516816-3517463 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1288149-1289103 bp]: array | spacers
           [Locus range 1497487-1498174 bp]: array | spacers
           [Locus range 1608857-1609151 bp]: array | spacers
           [Locus range 1701535-1701892 bp]: array | spacers
           [Locus range 1703755-1704045 bp]: array | spacers
           [Locus range 1841322-1842407 bp]: array | spacers
           [Locus range 2150181-2150275 bp]: array | spacers
           [Locus range 2191897-2192522 bp]: array | spacers
           [Locus range 3264111-3265595 bp]: array | spacers
           [Locus range 3510931-3511553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)